Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1665
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    27   2.3  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   5.3  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   7.0  
SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.0  

>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 570 FPKV-GHTTISFQEEL*GCRKINDILVTSVSQRPQR 466
           FPK+ GH   ++Q+ L  CR +N IL++ +S +  +
Sbjct: 268 FPKLKGHYEETYQKALHRCRTLNLILISFLSTKTDK 303


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 123 PVNYHLFKYRTYFP 164
           P  Y+LFKYR Y P
Sbjct: 693 PERYNLFKYRVYLP 706


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 339 KKLTIISKTLYFRIKYKN 286
           K+L I S T+ +RIKYKN
Sbjct: 413 KELLITSPTVPYRIKYKN 430


>SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 107

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 66  SFKHYSCFGFENSSFLPNFPVNYHLFKYRTY 158
           +FK ++CFG      LP   +  ++F++  Y
Sbjct: 11  TFKEFACFGNNYLIILPGIMLERNVFRHLNY 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,456
Number of Sequences: 5004
Number of extensions: 56804
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)