Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1665
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0237 - 16723400-16723594,16723658-16723712,16724016-167241...    30   1.3  
05_05_0305 - 23970692-23970825,23972323-23973703                       28   5.4  

>02_03_0237 -
           16723400-16723594,16723658-16723712,16724016-16724126,
           16724545-16724809,16725155-16725716
          Length = 395

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
 Frame = +2

Query: 470 CGRWDTEVTNISF----IFRHPYNSSW 538
           CGR+ TE T++SF    +   PYN+SW
Sbjct: 315 CGRYRTEFTDVSFHAPKLLSIPYNASW 341


>05_05_0305 - 23970692-23970825,23972323-23973703
          Length = 504

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 417 YSYSGLYWIGSWWNIKTKKVILCSKRKKL 331
           Y Y GLY I   W  +TK  I C K K L
Sbjct: 334 YIYDGLYKIQESWKERTKSGINCFKYKLL 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,983,939
Number of Sequences: 37544
Number of extensions: 288351
Number of successful extensions: 501
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)