Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1665
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41028-5|AAA82358.1|  185|Caenorhabditis elegans Hypothetical pr...    31   0.92 
AF067219-6|AAC17030.1|  382|Caenorhabditis elegans Innexin prote...    28   4.9  
Z81048-9|CAI79126.1|  560|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocar...    28   6.5  

>U41028-5|AAA82358.1|  185|Caenorhabditis elegans Hypothetical
           protein C25G6.1 protein.
          Length = 185

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +3

Query: 39  CSRPP--QCSPSFKHYSCFGFEN---SSFLPNFPVNYHLFKY 149
           C RP   +C PS ++   F FE     +FLPNF V +  F Y
Sbjct: 137 CCRPVLGRCRPSCRNTCQFDFEKLWLHNFLPNFVVQFSAFSY 178


>AF067219-6|AAC17030.1|  382|Caenorhabditis elegans Innexin protein
           15 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -2

Query: 491 LQYPNGHNESDANSKINLRPDIVMIIHTL 405
           ++ P+G   +D N  +++ PDIV+++H +
Sbjct: 329 VERPDGTYSNDYNRVLSINPDIVVVLHLI 357


>Z81048-9|CAI79126.1|  560|Caenorhabditis elegans Hypothetical
           protein C41G7.5b protein.
          Length = 560

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 54  QCSPSFKHYSCFGFENSSFLP-NFPVNYHLFKYRTYFPFPFT 176
           QC   F+  +C    NS FL   FP++ H + Y+ + P PF+
Sbjct: 27  QCKAHFQ--ACL--HNSQFLSAGFPMSTHSYSYQPHPPIPFS 64


>Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical
           protein C41G7.5a protein.
          Length = 602

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 54  QCSPSFKHYSCFGFENSSFLP-NFPVNYHLFKYRTYFPFPFT 176
           QC   F+  +C    NS FL   FP++ H + Y+ + P PF+
Sbjct: 69  QCKAHFQ--ACL--HNSQFLSAGFPMSTHSYSYQPHPPIPFS 106


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/77 (28%), Positives = 34/77 (44%)
 Frame = +2

Query: 152  HLFPFSVYFVRKFI*FYFYVSN*NTRMSCFWVNTNSFTNFVA*AQFLYFILKYNVFEMMV 331
            H   F+ YF RK+    F V N N R        N +T        L +++ Y  ++  V
Sbjct: 3053 HAEEFARYFTRKYGFIQFRVENRNRRSKAL----NRYTTTSNMFSDLPYLVFYKAYDGGV 3108

Query: 332  NFFRLLHKITFFVLIFH 382
             F  L ++I  FV+ F+
Sbjct: 3109 IFADLKYEIPEFVVSFY 3125


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/77 (28%), Positives = 34/77 (44%)
 Frame = +2

Query: 152  HLFPFSVYFVRKFI*FYFYVSN*NTRMSCFWVNTNSFTNFVA*AQFLYFILKYNVFEMMV 331
            H   F+ YF RK+    F V N N R        N +T        L +++ Y  ++  V
Sbjct: 3053 HAEEFARYFTRKYGFIQFRVENRNRRSKAL----NRYTTTSNMFSDLPYLVFYKAYDGGV 3108

Query: 332  NFFRLLHKITFFVLIFH 382
             F  L ++I  FV+ F+
Sbjct: 3109 IFADLKYEIPEFVVSFY 3125


>AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocarbon
           receptor orthologAHR-1 protein.
          Length = 602

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 54  QCSPSFKHYSCFGFENSSFLP-NFPVNYHLFKYRTYFPFPFT 176
           QC   F+  +C    NS FL   FP++ H + Y+ + P PF+
Sbjct: 69  QCKAHFQ--ACL--HNSQFLSAGFPMSTHSYSYQPHPPIPFS 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,115,941
Number of Sequences: 27780
Number of extensions: 302779
Number of successful extensions: 639
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)