Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1664
         (775 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q16XX9 Cluster: Tyrosine-protein kinase shark; n=2; Cul...    34   3.4  
UniRef50_Q6ZD87 Cluster: Putative uncharacterized protein P0438H...    33   6.0  
UniRef50_Q092V7 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  
UniRef50_A0CNL0 Cluster: Chromosome undetermined scaffold_22, wh...    33   7.9  

>UniRef50_Q16XX9 Cluster: Tyrosine-protein kinase shark; n=2;
           Culicidae|Rep: Tyrosine-protein kinase shark - Aedes
           aegypti (Yellowfever mosquito)
          Length = 939

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = -2

Query: 453 RRKPTTLREPGYSEIPIPVPTSTAKS*CNEKSGLSHTPLPA-KLCNRKSRRHESALTSRQ 277
           + K TT   PG S  P PVPT ++     E+S    TP  +  +   KS+ + S L  ++
Sbjct: 417 KHKVTT--SPGTSSPPGPVPTPSSNGTTPERSS---TPKSSPNIDENKSKPNSSTLKKKK 471

Query: 276 NCIISKLKILQESVI 232
           N II  +K L++S +
Sbjct: 472 NIIIDGMKSLRKSKV 486


>UniRef50_Q6ZD87 Cluster: Putative uncharacterized protein
           P0438H08.32; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0438H08.32 - Oryza sativa subsp. japonica (Rice)
          Length = 142

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 735 TMFTNGVCFQKFLSGAHVLERFQKAT-PRSLASQLPSPLIYPPRRPH 598
           T +T  +  + FL GAH+  R  +   PR + S L   L+ PP+RPH
Sbjct: 19  TAYTAPLKIRPFLGGAHLPPRHHRPPFPRHVGSLLLLLLLPPPKRPH 65


>UniRef50_Q092V7 Cluster: Putative uncharacterized protein; n=1;
           Stigmatella aurantiaca DW4/3-1|Rep: Putative
           uncharacterized protein - Stigmatella aurantiaca DW4/3-1
          Length = 654

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -2

Query: 708 QKFLSGAHVLERFQKATP--RSLASQLPSPLIYPPRRPHQLIFSGQPASSTLRGSENG 541
           Q   +G+ +L   Q+A P  R L +   +P    PRRPH+L  SG PA   +R +  G
Sbjct: 84  QDVRAGSGLLRPLQQALPGARGLGASAAAPPC-APRRPHRLSPSGDPAGGVVRFTAAG 140


>UniRef50_A0CNL0 Cluster: Chromosome undetermined scaffold_22, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_22,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 398

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = -3

Query: 188 HLFFILFLTS--CIICFLYYIKIKLCINFVIAIKI*VN 81
           ++ FI FL +  C+I FLY I+I L I+F+IAI I +N
Sbjct: 356 YITFISFLFNIVCMILFLYLIEINL-IHFIIAISIGIN 392


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 725,780,352
Number of Sequences: 1657284
Number of extensions: 14719971
Number of successful extensions: 40092
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40051
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)