Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1664
         (775 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    26   0.29 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   1.2  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    24   1.6  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    22   6.3  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   8.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 214 IFTINYLCNIYFLFYFLPVALSVFY 140
           IFT+++L   Y+ +Y   + L V+Y
Sbjct: 91  IFTVHFLLCTYYFYYAFIILLCVYY 115



 Score = 25.4 bits (53), Expect = 0.51
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -3

Query: 260 NLKFYRRVL*RFNM*YFYY*LSLQHLFFILFLTSCIICFLYYIKIKLCINFVI 102
           +L FY  ++    + YFYY   L  +  +L +  CI  F YY+ +  C  F+I
Sbjct: 225 HLLFYCVLIILLCIYYFYYAFILFTVHLLLLV--CIYYF-YYMHLLFCCAFII 274


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 238 CYNGLTCDIFTINYLCN 188
           C NG TC   T +Y C+
Sbjct: 70  CLNGATCQDHTTHYTCH 86


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 214 IFTINYLCNIYFLFYFLPVALSVFYTTL 131
           +   N  CN   LFY     + V+Y +L
Sbjct: 315 VLKTNKYCNFIILFYLSVFVILVYYASL 342


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 362 RAVSLTPRCLQNCAIAKVGG 303
           + + + P C  NC I  +GG
Sbjct: 211 KIIQVVPYCYINCLIYLIGG 230


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 442 YNT*GTRI*RNPYSGPHFDSEKLV 371
           +NT GT +     SG H +S+KLV
Sbjct: 266 FNTFGTILLIMTCSGVHSESQKLV 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,486
Number of Sequences: 336
Number of extensions: 4041
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)