Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1664
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    29   0.56 
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    29   0.56 
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    29   0.74 
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           26   6.9  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   6.9  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.9  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    26   6.9  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    25   9.1  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 271 YNLKT*NFTGECYNGLTCDIFTINYLCNIYFLFYFLPV 158
           YN+ T + T   +NG  C I+  ++ C++ +LF +L +
Sbjct: 232 YNIYTYHLTNTHHNGFECGIYYWHF-CDVVWLFLYLTI 268


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +3

Query: 339 AGCERDRSSHYTNFSLSKWG 398
           AGC R RSSHYT  S  K G
Sbjct: 546 AGCLRGRSSHYTELSTQKNG 565


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 16/24 (66%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 655 TVVSVTTTEPLDLS-AETAPPTHI 587
           T V V TTEP DLS AETAP   I
Sbjct: 84  TAVEVKTTEPQDLSTAETAPKVDI 107


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 170 FLTSCIICFLYYIKIKLCINFVIAIKI*VNY 78
           F   C++ F+Y+  + L  N ++AI    NY
Sbjct: 271 FEQKCMLSFIYFENVALYTNLLLAIVFVYNY 301


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 734 LCLLMVYVFRSFLAERMSW 678
           LC ++ +   SFLAER SW
Sbjct: 329 LCCILSFPVDSFLAERSSW 347


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 185 LFFILFLTSCIICFLYYIKIKLCINFV 105
           L  ILFL + I+C  Y  KI LC  ++
Sbjct: 30  LKIILFLNT-IVCIFYVYKIALCNEYI 55


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -2

Query: 759 RALFFLFETMFTNGVCFQKFLSGAHVLERFQKATPRSLASQLPSPLIYPPRRP 601
           RAL+     +   G C Q   +G+     F     RS + +  + +I PP+ P
Sbjct: 4   RALYSHDNNILIFGFCVQIMSAGSQTKLNFSVRKTRSSSKRSNAAIIEPPKNP 56


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 711 FQKFLSGAHVLERFQKATP 655
           F+ FLSGAH ++ +  +TP
Sbjct: 298 FEAFLSGAHAMDEYFCSTP 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,363
Number of Sequences: 5004
Number of extensions: 63360
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)