Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1664
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0112 + 875447-875490,875854-876359,876750-876976,877112-87...    28   7.2  
03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432     28   7.2  
09_06_0204 - 21559024-21559287,21559445-21559567,21559665-215597...    28   9.5  

>11_01_0112 +
           875447-875490,875854-876359,876750-876976,877112-877237,
           877313-877359,877888-878251,878396-878779
          Length = 565

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -2

Query: 675 RFQKATPRSLASQLPSPLIYPPRRPHQLIFSGQPASSTLRGSENGVNRLLFRMMRMHN*H 496
           R +K TP +  S  PS +    R     I   + +     GSE G   +  RM+++    
Sbjct: 24  RTEKPTPDTAISLFPSRIFRASRS--STINMSEESGLAAHGSEEGFPSVEIRMLKLEGNR 81

Query: 495 NISLDI 478
           ++ LDI
Sbjct: 82  DVCLDI 87


>03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432
          Length = 314

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 711 FQKFLSGAHVLERFQKATPRSLASQLPSPLIYPPRRPHQL 592
           FQ+ + GA V      A   +LA Q+ S  + PP +PH L
Sbjct: 196 FQRGVGGAAVAAHIHGAAAVALAEQM-SAFVSPPPQPHML 234


>09_06_0204 - 21559024-21559287,21559445-21559567,21559665-21559718,
            21559800-21560721,21560803-21561212,21561284-21561408,
            21561524-21561571,21561668-21561789,21562008-21562099,
            21562242-21562429,21562582-21562696,21562780-21562863,
            21562994-21563087,21563393-21563510,21563805-21563930,
            21564002-21564074,21564209-21564296,21564674-21564744,
            21564839-21564918,21565004-21565065,21565169-21565310,
            21565410-21565510,21565600-21565644,21565725-21565789,
            21566088-21566163,21566246-21566300,21566416-21566773
          Length = 1366

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = -2

Query: 468  SPN*HRRKPTTLREPGYSEIPIPVPTS----TAKS*CNEKSGLSHTPLPAKLCNRK-SRR 304
            +P+ H  + +T+ E  Y+E+PI  P++     A +  NE   +   P+     NR  S  
Sbjct: 921  NPSEHITQQSTVMEETYAEVPIASPSNRNGENASTVMNEGDPVLDLPISLSAANRNISCV 980

Query: 303  HESALTSRQNCIISKLK 253
              SA T  ++  IS L+
Sbjct: 981  STSAATPERSGSISHLE 997


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,186,937
Number of Sequences: 37544
Number of extensions: 400375
Number of successful extensions: 974
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)