Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1664
(775 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_40607| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_47252| Best HMM Match : TP2 (HMM E-Value=9.6) 30 1.8
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0) 30 1.8
SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_55378| Best HMM Match : Connexin50 (HMM E-Value=1.8) 29 5.5
SB_38687| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_38101| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 28 9.6
SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_35666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34) 28 9.6
SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 515 CVCTINITFP*IYFSNPQTDIGGNLQHLGNQDIAKSLFRSPLRQRK 378
C INIT + FS+ T+ GN QH +D K PL+ K
Sbjct: 184 CARKINITPTCLKFSSQSTNTTGNKQHKKKKDKGKDESSKPLKDSK 229
>SB_40607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 658 PTVVSVTTTEPLDLSAETAPPTHIF 584
PT +S+ T P DLS ETA PT ++
Sbjct: 107 PTDLSIATAYPTDLSIETAYPTDLY 131
>SB_47252| Best HMM Match : TP2 (HMM E-Value=9.6)
Length = 291
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 676 ALSESNPTVVSVTTTEPLDLSAETAPPTHI 587
+++ + PT +S+ T P DLS ETA PT +
Sbjct: 51 SIATAYPTDLSIVTAYPTDLSIETAYPTDL 80
>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
Length = 1649
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -2
Query: 429 EPGYSEIPIPVPTSTAKS*CNEKSGLSHTPLPAKLCNRKSRRHESALTSRQNCIIS 262
EPG +++P P+ + K C+E G HT KL R +SA ++C +S
Sbjct: 841 EPGINKVPGPIDWNRDKDDCSELQGF-HTASGVKL-KASERSLQSARRMWESCSVS 894
>SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 715
Score = 30.3 bits (65), Expect = 1.8
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = -1
Query: 649 VSVTTTEPLDLSAETAPPTHIFGTACEFNTTRVGEWSQPVA-VSYDAYAQ--LT*HFLRY 479
VS TT DLS P H++ + TT GE+SQPV+ ++ +A+ Q LT L
Sbjct: 394 VSKTTYNLTDLS-----PFHMYNISISAFTTEYGEFSQPVSCLTGEAHFQLKLTMMLLMM 448
Query: 478 TSLIPKLT 455
TS+ LT
Sbjct: 449 TSMTMMLT 456
>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = -2
Query: 450 RKPTTLREPGYSEIPIP-VPTSTAKS*CNEKS--GLSHTPLPAKLCNRKSRRHESALTSR 280
R +TLR S I P PT+T+ + +S G T K RKSR + T++
Sbjct: 208 RSRSTLRSRAGSRIRTPSTPTTTSSRASSRESARGTRTTTTTKKCVTRKSRGRNGSNTTK 267
Query: 279 QNCIISK 259
C+ ++
Sbjct: 268 TKCVTTR 274
>SB_55378| Best HMM Match : Connexin50 (HMM E-Value=1.8)
Length = 455
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1
Query: 286 CQCRLVPPTFAIAQFCRQRGVRETALLITLTFRCRSGDRNRDFAISWFPKC 438
CQ V P + +FC +R R A + +CR N+ + F KC
Sbjct: 191 CQTNNVKPKEFVERFCPERFSRSHACRKRVRRKCRDNSINKMYQNDIFNKC 241
>SB_38687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 28.3 bits (60), Expect = 7.3
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -2
Query: 450 RKPTTLREPGYSEIPIPVPTSTAKS*CNEKSGLSHTPLPAKLCNR---KSRRHESALTSR 280
R TT R G +IP+ T TA CNE + + L A+L NR K H S
Sbjct: 17 RAVTTARLSG-KQIPMKRSTDTAMRVCNEANDVMIDVLAARLHNRLPSKPSTHSSMQIKM 75
Query: 279 QNCIISKL 256
+ ++KL
Sbjct: 76 KMSSLAKL 83
>SB_38101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -2
Query: 690 AHVLERFQKA--TPRSLASQLPSPLIYPPRRPHQLIFSGQPASSTLRGSENGVNRL 529
A++L+ F A +P S A+ I PR +I P++ TLRGS G NR+
Sbjct: 231 ANLLDAFVAAAGSPTSRAATSSLGSISTPRSRRSIIIP-TPSTPTLRGSPRGSNRI 285
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = -2
Query: 774 IYKNIRALFFLFETMFTNGVCFQKFLSGAHVLERFQKATPRSLASQL---PS--PLIYPP 610
+ ++RA++ +E++ G+ F + ++ TP + A Q PS P PP
Sbjct: 458 VSSSVRAMYLSYESLLNLGLLSTDFPTNPVGRHDGRRPTPMAAAYQSRTHPSTPPRTVPP 517
Query: 609 RRPHQLIFSGQPASS 565
+RP +L F P ++
Sbjct: 518 QRPSELPFPCTPETN 532
>SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 855
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 667 ESNPTVVSVT--TTEPLDLSAETAPPTHIFGTACEFNTTRVGEWSQPVA 527
E TVVSV TTEP+ SA+ + ++ + R G W P A
Sbjct: 617 ELEETVVSVDNITTEPIKCSAQLSKMVAMYAGYLTLSQRREGSWVFPTA 665
>SB_35666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 542 PFSDPRSVELAGCPENMSWWGRLG 613
PFS P + L+GC ++ W LG
Sbjct: 13 PFSTPTPIYLSGCGDDREWQNGLG 36
>SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)
Length = 1071
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 250 FTGECYNGLTCDIFTINYLCNIYFLFY 170
F C NG C I+ Y C+ Y FY
Sbjct: 381 FPNPCLNGGVCHIWYNKYTCDCYKTFY 407
>SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = -1
Query: 259 T*NFTGECYNGLTCDIFTINYLCNIYFLFYFLPVALSVFYTTLR 128
T NF G+ Y G+T T+ L N++F+F +PV L VF+ +R
Sbjct: 879 TLNFIGK-YLGIT----TMTVLVNVWFVFVIIPV-LIVFWLIVR 916
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,709,804
Number of Sequences: 59808
Number of extensions: 474513
Number of successful extensions: 1147
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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