Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1664
         (775 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075233-1|AAL68100.1|  483|Drosophila melanogaster AT19278p pro...    30   3.1  
AE014134-2313|AAF53273.2|  483|Drosophila melanogaster CG31728-P...    30   3.1  
AE014134-1504|AAN10666.1|  108|Drosophila melanogaster CG31894-P...    29   5.4  

>AY075233-1|AAL68100.1|  483|Drosophila melanogaster AT19278p
           protein.
          Length = 483

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -2

Query: 447 KPTTLREPGYSEIPIPVPTSTAKS*CNEKSGLSHTPLPAKLCNR 316
           +PTT R P Y   P PV T+T        SG S   LP +  N+
Sbjct: 193 RPTTTRRPTYPSYPSPVTTTTTTR--RPVSGTSSEGLPLQCGNK 234


>AE014134-2313|AAF53273.2|  483|Drosophila melanogaster CG31728-PA
           protein.
          Length = 483

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -2

Query: 447 KPTTLREPGYSEIPIPVPTSTAKS*CNEKSGLSHTPLPAKLCNR 316
           +PTT R P Y   P PV T+T        SG S   LP +  N+
Sbjct: 193 RPTTTRRPTYPSYPSPVTTTTTTR--RPVSGTSSEGLPLQCGNK 234


>AE014134-1504|AAN10666.1|  108|Drosophila melanogaster CG31894-PA
           protein.
          Length = 108

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -2

Query: 399 VPTSTAKS*CNEKSGLSHTPLPAKLCNRKSRRHESALTSRQNCIISKLKILQESV 235
           VPT+ ++   +  S +    +PA   N  S  + S  T+   C I KLKIL ES+
Sbjct: 39  VPTAFSRPGESTASHIRTIHMPAPPSNSTSTFNRSTRTTGTWCAICKLKILWESI 93


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,997,629
Number of Sequences: 53049
Number of extensions: 707884
Number of successful extensions: 2125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2120
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3581842374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)