Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1664
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36305.1 68415.m04456 CAAX amino terminal protease family pro...    30   1.5  
At1g22870.1 68414.m02855 protein kinase family protein contains ...    29   3.4  
At4g40090.1 68417.m05675 arabinogalactan-protein (AGP3)  InDels ...    29   4.5  
At2g46400.1 68415.m05775 WRKY family transcription factor              29   4.5  
At4g33990.1 68417.m04823 pentatricopeptide (PPR) repeat-containi...    28   7.9  

>At2g36305.1 68415.m04456 CAAX amino terminal protease family
           protein similar to CAAX prenyl protease 2 (EC 3.4.22.-)
           (Prenyl protein-specific endoprotease 2)
           (Farnesylated-proteins converting enzyme 2) (FACE-2)
           from Mus musculus [SP|P57791], Homo sapiens [SP|Q9Y256],
           Drosophila melanogaster [SP|Q9U1H8]; contains Pfam
           profile PF02517 CAAX amino terminal protease family
           protein
          Length = 242

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 773 YTKILERCFFCLKLCLLMVYVFRSFLAERMSWSA 672
           YT+ + R F C  +C +   VF +F+    SW A
Sbjct: 43  YTEFMIRRFICAAICTVASLVFTAFILPIKSWEA 76


>At1g22870.1 68414.m02855 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 913

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
 Frame = -1

Query: 391 FDSEKLV**EERSLSHPAACKIVQSQKSAARVGTDIAS---KLYNLKT*NFTGECYNGLT 221
           +D E  +   + SL++ A  ++V+S+ S+A V +DI S     Y+L       +C+N + 
Sbjct: 237 YDVEDSILPLQPSLNYTAP-ELVRSKTSSAGVSSDIFSFGCLTYHLVARKPLFDCHNNVK 295

Query: 220 CDIFTINYLCNIYF 179
             + T+NYL N  F
Sbjct: 296 MYMNTLNYLTNETF 309


>At4g40090.1 68417.m05675 arabinogalactan-protein (AGP3)  InDels
           between the genome sequence and the cDNA prevent
           identical translations from being annotated; the basis
           for this is under investigation.
          Length = 87

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 633 PSPLIYPPRRPHQLIFSGQPASSTLRGSENGVNRL 529
           PSP++ P   P    F+   +  T  GS N  NRL
Sbjct: 38  PSPVVTPTAEPPARCFTPYSSQRTHSGSNNSTNRL 72


>At2g46400.1 68415.m05775 WRKY family transcription factor
          Length = 295

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +1

Query: 673 ALQDMRSAKKLLKTYTISKHSFKQKKQRSNIFV 771
           +L+D+ + K + +T++ S H  +    +SN+F+
Sbjct: 210 SLEDLENKKNIFRTFSFSNHEIENGVWKSNLFL 242


>At4g33990.1 68417.m04823 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 823

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 232 NGLTCDIFTINYLCNIYFLFYFLPVALSVFYTTLR*NYV 116
           NGL  D+F +  L ++Y     L  ALS+FY   R N V
Sbjct: 480 NGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSV 518


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,746,057
Number of Sequences: 28952
Number of extensions: 325550
Number of successful extensions: 819
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)