Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1663
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    28   1.6  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    28   1.6  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   6.5  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   8.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   8.6  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    25   8.6  

>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 2   FTKTWPSQKKHGMGLLRTSAYSATFNAMIWRITFLTQIILLRCCKSRWS 148
           F   +P QK   +G LR         +++  + FL+  +L RCC S WS
Sbjct: 117 FLLAFPFQKIFALGYLRWYGLGVYLYSILI-LLFLSHCVL-RCCLSNWS 163


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/79 (25%), Positives = 32/79 (40%)
 Frame = -2

Query: 652 LGRL*RNNWSFLHRSFVFQSYVMAVDLINRQFDIASHTFQSILCYEIKLKTLTTIFVLIT 473
           LG+L R+NW  +  +F  +  + A D +              LCY    K    I   +T
Sbjct: 195 LGKL-RSNWLDVSGAFHSRYMLPARDSLKNALGETEFNISPELCYTDSGKRFLPIISNVT 253

Query: 472 MSVPPKNGTSIE*KLLMNC 416
             + P +   I  +LL+ C
Sbjct: 254 AELYPADEEDIRRQLLLQC 272


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 569  QSSI*HCKPYISEYPLL*NKTENVDDNFRIDNNVSASQKWH 447
            QS + +C     E     ++ E + D+F +DN+V AS K H
Sbjct: 2152 QSDVLYCTRVQKERFASVDEYEKLKDSFIVDNSVLASAKSH 2192


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 624 VSFIAVSCFKVTLWLSI*SIVNLTL 550
           + FI + CFK+T W+++   +  T+
Sbjct: 409 IIFIHIYCFKITSWVNLYGWITCTI 433


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 470 HCYQYENCRQRFQ 508
           HC   ENCR+R+Q
Sbjct: 226 HCLNSENCRRRYQ 238


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 20/88 (22%), Positives = 43/88 (48%)
 Frame = +1

Query: 82  DDMEDHISNADHLAKMLQVEVEFRIYNGLYRMMDNSFQCLTCNEVFRLVKTSIQACVTHI 261
           DD+E ++   +H       + + +++  L+RM+ N    +  +E   L+   I+   ++I
Sbjct: 368 DDLESYLIRRNHFLSFPLCKEQIQLHTDLFRMIING--VMYVHEGVNLIHRDIKP--SNI 423

Query: 262 FYAPNISRYKKNWQRLQKMPLILYNLKS 345
           F A ++   + +      +PLI YN K+
Sbjct: 424 FLAKSLPEDRGS------VPLISYNDKN 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,550
Number of Sequences: 5004
Number of extensions: 63042
Number of successful extensions: 215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)