Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1663
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1540 - 27570605-27571375,27571474-27572748,27572769-275729...    31   0.73 
03_02_0842 + 11682332-11683802,11683858-11683940,11684751-116865...    30   2.2  
02_01_0265 - 1754861-1755063,1755186-1755360,1755558-1755653,175...    29   5.2  
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916...    28   6.8  
10_07_0195 + 13972656-13972970,13973518-13973848,13975312-139754...    28   9.0  

>07_03_1540 -
           27570605-27571375,27571474-27572748,27572769-27572921,
           27572923-27573159
          Length = 811

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 17/79 (21%), Positives = 34/79 (43%)
 Frame = +2

Query: 488 NCRQRFQFYFITKDTLKCMACNVKLTIDQIDSHNVTLKHETAMKETPVITLKSAETSLSE 667
           NC   F+  FI +  L   A  +   +D+ +  N   KH     +   ++L+ A T +  
Sbjct: 543 NCSGVFRDLFINQTNLLDRAVKMVAELDEPEEMNYVRKHAQEQAQELGVSLREATTRVFS 602

Query: 668 RYALMFTTAVSAIASNTAW 724
             +  +++ V+    N +W
Sbjct: 603 NASGSYSSNVNLAVENASW 621


>03_02_0842 + 11682332-11683802,11683858-11683940,11684751-11686553,
            11687783-11688633,11689230-11689299,11689597-11689641
          Length = 1440

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/79 (21%), Positives = 33/79 (41%)
 Frame = +2

Query: 488  NCRQRFQFYFITKDTLKCMACNVKLTIDQIDSHNVTLKHETAMKETPVITLKSAETSLSE 667
            NC   F+  FI +  L   A  +   +D+ +  N   KH         ++L+ A T +  
Sbjct: 1107 NCSGVFRDLFINQMNLLDRAVKMVAELDEPEEMNYVRKHAQEQARELGVSLREAATRVFS 1166

Query: 668  RYALMFTTAVSAIASNTAW 724
              +  +++ V+    N +W
Sbjct: 1167 NASGSYSSNVNLAVENASW 1185


>02_01_0265 -
           1754861-1755063,1755186-1755360,1755558-1755653,
           1756110-1756256,1756343-1756511,1756661-1756812,
           1756898-1756968,1757064-1757247,1757332-1757523,
           1757664-1757771
          Length = 498

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 267 RSKHKQIQEKLAKAAKDATDIVQLKEFGQYFNKNKSELSKDLIIKKETMEQF 422
           RS H   QE+  K  +D   +     F  Y  KNK +L K L    E ++QF
Sbjct: 209 RSMHLAKQEECMKKIRDLGSL-PADAFETYKRKNKKQLQKMLYDCNEQLQQF 259


>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
            14291855-14292025,14292560-14292647,14292711-14292802,
            14292920-14293384,14293860-14294633,14294890-14295087,
            14296940-14297374,14297455-14297688,14298042-14298323
          Length = 1596

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +2

Query: 497  QRFQFYFITKDTLKCMACNVKLTIDQIDSHNVTLKHE 607
            +  +F+F   + ++C   ++K+T++ IDSH+   + E
Sbjct: 1326 RHIKFHF--PNPIRCRIVSIKMTLNHIDSHSTKFREE 1360


>10_07_0195 +
           13972656-13972970,13973518-13973848,13975312-13975463,
           13975573-13976280,13976424-13976615,13977264-13977425
          Length = 619

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 228 HQPKNLVACQALE*VVHHSVESIIDPKLHLDL 133
           HQ   LVAC   + +VH SV  + DP + + +
Sbjct: 240 HQALELVACHLRKYLVHRSVIPLFDPHVSIPI 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,175,880
Number of Sequences: 37544
Number of extensions: 374087
Number of successful extensions: 917
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)