Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1663
(743 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38499| Best HMM Match : TP2 (HMM E-Value=1.5) 31 0.75
SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_35424| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5) 30 1.7
SB_42140| Best HMM Match : DUF1690 (HMM E-Value=0.048) 29 5.3
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_20752| Best HMM Match : hATC (HMM E-Value=0.04) 28 7.0
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_41004| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_9541| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_20937| Best HMM Match : hATC (HMM E-Value=0.04) 28 9.2
SB_5975| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_38499| Best HMM Match : TP2 (HMM E-Value=1.5)
Length = 421
Score = 31.5 bits (68), Expect = 0.75
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +2
Query: 578 DSHNVTLKHETAMKETPVITLKSAETSLSERY 673
++H ++++H T +K+ P +TL+ ++L RY
Sbjct: 50 NNHTMSIRHATTLKQRPSVTLQKPYSALPSRY 81
Score = 31.1 bits (67), Expect = 0.99
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 581 SHNVTLKHETAMKETPVITLKSAETSLSERY 673
+H V+++H T K+ P +TL+ ++L RY
Sbjct: 147 NHTVSIRHATTSKQRPSVTLQQLYSALPSRY 177
>SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 31.1 bits (67), Expect = 0.99
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -3
Query: 684 NIRAYLSDKLVSADFN-VITGVSFIAVSCFKVTLWLSI*SIVNLTLQAIHFRVSFVM 517
N Y + + +F V+TGVSF+ ++ V +L + S ++ + ++RV FV+
Sbjct: 279 NFNLYCQNAFLIYNFGKVLTGVSFLTLTLISVDRYLLVTSGIDYPTKVTNYRVGFVI 335
>SB_35424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 622 NSSYYVKVCRDEFIREVRPDVYHCGFC 702
N YY ++CR ++ + + Y CGFC
Sbjct: 101 NEKYYKQICRADYEKYLEECPYTCGFC 127
>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
Length = 546
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +2
Query: 578 DSHNVTLKHETAMKETPVITLKSAETSLSERY 673
++H ++++H T K+ P +TL+ ++L RY
Sbjct: 430 NNHTMSIRHATTSKQRPSVTLQQPYSALPSRY 461
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 551 NVKLTIDQIDSHNVTLKHETAMKETPVITLKSAETSLSERY 673
N + + S V+++H T K+ P +TL+ +L RY
Sbjct: 463 NHRASFRHATSTTVSIRHATTSKQRPSVTLQQPHRALPSRY 503
>SB_42140| Best HMM Match : DUF1690 (HMM E-Value=0.048)
Length = 151
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 267 RSKHKQIQEKLAKAAKDATDIVQLKEFGQYF-NKNKSELSKDLIIK 401
R + +QI+E LAK A ++TD + E G F K +++ K+L ++
Sbjct: 54 RKRLRQIEESLAKKATESTDGIAHAENGDSFVEKLMAQVVKNLKVR 99
>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 94 DHISN--ADHLAKMLQVEVEFRIYNGLYRMMDNSFQCLTCNEV 216
+HI N D++A + ++ + NG M+DNS ++C+EV
Sbjct: 85 EHIENNSPDNIAYKIGEKIADQCSNGFILMIDNSKMSISCDEV 127
>SB_20752| Best HMM Match : hATC (HMM E-Value=0.04)
Length = 578
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 231 NLNSSMCNTHFLRSKHKQIQEKLAKAAKDATDIVQ-LKEFGQYFNKNKSELSKDL-IIKK 404
++ S+ H KH+ +EKL K K DIVQ L ++ Q + LS + +
Sbjct: 100 SVKMSIMKVHVKSKKHELNKEKLKKLGKREEDIVQALHKYDQAHHPKGQTLSTSTRVFRI 159
Query: 405 ETMEQFINNFYSI 443
+ ++ F+ + S+
Sbjct: 160 KVVQAFLKSGTSL 172
>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1950
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -3
Query: 309 QPLPVFLVSAYVWSVKNVCYTCLN*GFHQPKNL 211
QPL SAY WS K YT N + P L
Sbjct: 878 QPLSAVFNSAYQWSSKAFLYTLYNKNGYSPAKL 910
>SB_41004| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 267 RSKHKQIQEKLAKAAKDATDIVQLKEFGQYF-NKNKSELSKDL 392
R + +QI+E LAK A ++TD + E G F K +++ K+L
Sbjct: 50 RKRLRQIEESLAKKATESTDGIAHAENGDSFVEKLMAQVIKNL 92
>SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +2
Query: 506 QFYFITKDTL--KCMACNVKLTIDQIDSHNVTLKHETAMKETPVITLKSAETSLSERYAL 679
+F+ + T+ C+A + ++ I + +T A+KETP L+SA ++ +
Sbjct: 197 EFFLLPAKTIVSSCLATLLVRPLETIPAPTLTTPTSPALKETPTPGLESAPAAMPDATDT 256
Query: 680 MFTTA 694
+ TA
Sbjct: 257 AWVTA 261
>SB_9541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 267 RSKHKQIQEKLAKAAKDATDIVQLKEFGQYF-NKNKSELSKDL 392
R + +QI+E LAK A ++TD + E G F K +++ K+L
Sbjct: 106 RKRLRQIEESLAKKATESTDGIAHAENGDSFVEKLMAQVIKNL 148
>SB_20937| Best HMM Match : hATC (HMM E-Value=0.04)
Length = 606
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 231 NLNSSMCNTHFLRSKHKQIQEKLAKAAKDATDIVQ-LKEFGQYFNKNKSELSKDL-IIKK 404
++ S+ H KH+ +EKL K K DIVQ L ++ Q + LS + +
Sbjct: 100 SVKMSIMKVHVKSKKHELNKEKLKKLGKRKEDIVQALHKYDQAHHPKGETLSTSTRVFRI 159
Query: 405 ETMEQFINN 431
+ ++ F+ +
Sbjct: 160 KVVQAFLKS 168
>SB_5975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +3
Query: 234 LNSSMCNTHFLRSKHKQIQEKLAKAAKDATDIVQLKEFGQYFNKNKSELSKDLIIKKETM 413
+ SM + FL S HK+ E L + D V FG+ S + K +++ +++
Sbjct: 129 ITHSMGGSEFLSSLHKRFLEFLT--THPSLDCVS---FGETVPMQLSWIFKSVLVSRDSA 183
Query: 414 EQFINNFYSIEV 449
+ I F+S++V
Sbjct: 184 DPGIGAFHSVDV 195
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,920,122
Number of Sequences: 59808
Number of extensions: 470746
Number of successful extensions: 1320
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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