Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1663
         (743 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT004493-1|AAO42657.1|  648|Drosophila melanogaster GH27039p pro...    31   2.2  
AE013599-1630|AAF58430.2|  290|Drosophila melanogaster CG3915-PA...    31   2.2  
AE013599-1629|AAF58429.3|  648|Drosophila melanogaster CG3915-PB...    31   2.2  

>BT004493-1|AAO42657.1|  648|Drosophila melanogaster GH27039p
           protein.
          Length = 648

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 589 RNFETRNCDEGNSSYYVKVCRDEFIREVRPDVYHC 693
           ++  TRNC     SY VK+C     R++ PD Y C
Sbjct: 505 KDIATRNCYLDEESY-VKICDSALSRDLFPDDYDC 538


>AE013599-1630|AAF58430.2|  290|Drosophila melanogaster CG3915-PA,
           isoform A protein.
          Length = 290

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 589 RNFETRNCDEGNSSYYVKVCRDEFIREVRPDVYHC 693
           ++  TRNC     SY VK+C     R++ PD Y C
Sbjct: 147 KDIATRNCYLDEESY-VKICDSALSRDLFPDDYDC 180


>AE013599-1629|AAF58429.3|  648|Drosophila melanogaster CG3915-PB,
           isoform B protein.
          Length = 648

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 589 RNFETRNCDEGNSSYYVKVCRDEFIREVRPDVYHC 693
           ++  TRNC     SY VK+C     R++ PD Y C
Sbjct: 505 KDIATRNCYLDEESY-VKICDSALSRDLFPDDYDC 538


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,651,037
Number of Sequences: 53049
Number of extensions: 671681
Number of successful extensions: 2171
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2171
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)