Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1663
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-6|CAB05763.1|  355|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    30   2.0  
AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical ...    30   2.0  
AC024812-2|AAF59555.1|  304|Caenorhabditis elegans Hypothetical ...    30   2.0  

>Z83233-6|CAB05763.1|  355|Caenorhabditis elegans Hypothetical
           protein K06B4.6 protein.
          Length = 355

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +3

Query: 282 QIQEKLAKAAKDATDIVQLKEFGQYFNKNKSELSKDLIIKKETMEQFINNFYSIEVPFLG 461
           + Q+ L    K A+   ++   G Y + N  +L  DLI+K +       +FYS+E P L 
Sbjct: 74  RFQKCLNIGMKAASKNDRIVSIGNYEDYNFDKLLNDLIVKNDKNYSNFIDFYSLEDPSL- 132

Query: 462 GTDIVINTKIV 494
             DI+ +  I+
Sbjct: 133 -KDIIEDRSIM 142


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 55   KCILCDIQCDDMEDHISNAD--HLAKMLQVEVEFRIYNGLYRMMDNSFQCLT 204
            KCI   ++CD ++D   N+D  H  ++   E   R  + +Y+    +F+C++
Sbjct: 1193 KCISKQLECDGVDDCGDNSDEKHCTEIRLDEAALRCQSPMYQCDGPNFKCIS 1244


>AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical
            protein BE0003N10.3 protein.
          Length = 1145

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +1

Query: 67   CDIQCDDMEDHISNADHLAKMLQV-EVEFRIYNGLYRMMDNSFQCLTCNEVFR--LVKTS 237
            C    +D      N DH+ K ++  +  F +    +  M N ++C+TCN   R  + ++ 
Sbjct: 1040 CSQASEDQNQVYDNLDHVEKAIKKGQCLFSVSGKDFYPMHNFYRCITCNSSDRNAICQSC 1099

Query: 238  IQAC 249
            I+ C
Sbjct: 1100 IERC 1103


>AC024812-2|AAF59555.1|  304|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.3 protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 178 MDNSFQCLTCNEVFRLVKTSIQACVTHIFYAPNISRYKK 294
           +DN  QC TC + F+L +        HIF+ P I  + K
Sbjct: 232 IDNGAQCTTCFDTFKLDEDVGALDCNHIFHRPCIEPWLK 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,258,712
Number of Sequences: 27780
Number of extensions: 363556
Number of successful extensions: 1145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)