Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1663
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   7.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.2  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/64 (18%), Positives = 27/64 (42%)
 Frame = +1

Query: 118 LAKMLQVEVEFRIYNGLYRMMDNSFQCLTCNEVFRLVKTSIQACVTHIFYAPNISRYKKN 297
           L   + ++  F I+N  ++    SFQ L      R+++ +    +  +     + RY   
Sbjct: 173 LISSIPLDYIFLIFNQ-FQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQ 231

Query: 298 WQRL 309
           W+ +
Sbjct: 232 WEEV 235


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/64 (18%), Positives = 27/64 (42%)
 Frame = +1

Query: 118 LAKMLQVEVEFRIYNGLYRMMDNSFQCLTCNEVFRLVKTSIQACVTHIFYAPNISRYKKN 297
           L   + ++  F I+N  ++    SFQ L      R+++ +    +  +     + RY   
Sbjct: 173 LISSIPLDYIFLIFNQ-FQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQ 231

Query: 298 WQRL 309
           W+ +
Sbjct: 232 WEEV 235


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/64 (18%), Positives = 27/64 (42%)
 Frame = +1

Query: 118 LAKMLQVEVEFRIYNGLYRMMDNSFQCLTCNEVFRLVKTSIQACVTHIFYAPNISRYKKN 297
           L   + ++  F I+N  ++    SFQ L      R+++ +    +  +     + RY   
Sbjct: 173 LISSIPLDYIFLIFNQ-FQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQ 231

Query: 298 WQRL 309
           W+ +
Sbjct: 232 WEEV 235


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 503 NVDDNFRIDNNVSASQKWH 447
           N +DN R DN V  S K H
Sbjct: 526 NQNDNNRNDNQVHHSSKLH 544


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 142 VEFRIYNGLYRMMDN 186
           V  R YN +Y+++DN
Sbjct: 554 VSLRFYNVVYKLIDN 568


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 62  YSATFNAMIWRITFLTQIILLRCCKSRWSL 151
           YSA F    WR+T        +C KSR +L
Sbjct: 362 YSADFRLAFWRLT------CRKCFKSRTNL 385


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 460 EALTLLSIRKLSSTFSVLFHNKGYSEMYG 546
           EAL  + +  +S   + + +N  YS +YG
Sbjct: 579 EALEAVRLGHMSINQAAIHYNLPYSSLYG 607


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,259
Number of Sequences: 438
Number of extensions: 4451
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)