Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1663
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13630.1 68418.m01580 magnesium-chelatase subunit chlH, chlor...    31   1.1  
At4g15970.1 68417.m02424 expressed protein similar to GI:2827651...    30   1.9  
At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger) fa...    30   1.9  
At3g08880.1 68416.m01032 expressed protein                             29   3.3  
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa...    29   3.3  
At1g11420.1 68414.m01312 agenet domain-containing protein contai...    29   3.3  
At3g13430.1 68416.m01688 zinc finger (C3HC4-type RING finger) fa...    28   7.5  
At5g48060.1 68418.m05938 C2 domain-containing protein contains I...    27   9.9  
At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR...    27   9.9  

>At5g13630.1 68418.m01580 magnesium-chelatase subunit chlH,
            chloroplast, putative / Mg-protoporphyrin IX chelatase,
            putative (CHLH) nearly identical to magnesium chelatase
            subunit GI:1154627 from [Arabidopsis thaliana]; contains
            Pfam profile: PF02514 CobN/magnesium chelatase family
            protein
          Length = 1381

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/79 (22%), Positives = 32/79 (40%)
 Frame = +2

Query: 488  NCRQRFQFYFITKDTLKCMACNVKLTIDQIDSHNVTLKHETAMKETPVITLKSAETSLSE 667
            NC   F+  FI +  L   A  +   +D+    N   KH     E   I ++ A T +  
Sbjct: 1085 NCSGVFRDLFINQMNLLDRAIKMVAELDEPVEQNFVRKHALEQAEALGIDIREAATRVFS 1144

Query: 668  RYALMFTTAVSAIASNTAW 724
              +  ++  +S    N++W
Sbjct: 1145 NASGSYSANISLAVENSSW 1163


>At4g15970.1 68417.m02424 expressed protein similar to GI:2827651,
           GI:7527728, GI:4406788, GI:6063544,  GI:10764853 from
           [Arabidopsis thaliana]
          Length = 367

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 102 NVILHIIALNVAEYALVLNNPIPCFFCDGHVFVN 1
           N++L I    +  + L +NN    FFC G +FVN
Sbjct: 333 NIMLFIKTYIILNFCLPMNNIRKFFFCFGSIFVN 366


>At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 195

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 607 NCDEGNSSYYVKVCRDEFIREVRPDVYHCGFCN 705
           +C      YY K+C+   + +   ++YHC +CN
Sbjct: 20  SCSSSMGKYYCKICK---LFDDDREIYHCPYCN 49


>At3g08880.1 68416.m01032 expressed protein
          Length = 107

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 85  DMEDHISNADHLAKMLQVEVEFRIYNGLYRMMDNSFQCLT--CNEVFRLVKTSIQACVTH 258
           D+ED +S  D L  +L V+  F I +         F+ L   C+E F  ++ SI+ C T 
Sbjct: 9   DIEDLMSYGDDLINLLNVKNGFDIIS----QSSEQFKALNFACHEDFNQIQGSIEDCKTK 64

Query: 259 IF 264
           ++
Sbjct: 65  LY 66


>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 255

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 592 NFETRNCDEGNSSYYVKVCRDEFIREVRPDVYHCGFCN 705
           N    +C      Y+ K+C+   + +    +YHC +CN
Sbjct: 75  NCSNTSCKSSMGKYFCKICK---LYDDERKIYHCPYCN 109


>At1g11420.1 68414.m01312 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 604

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 451 GTSIE*KLLMNCSIVSFLIIRSFESSDLFLLKY*PNSLSC 332
           GT +E  L  +C+ +  ++I+  E    FL+KY   S SC
Sbjct: 155 GTMVE--LRFDCAWIPVIVIKELEKDKRFLVKYWNKSYSC 192


>At3g13430.1 68416.m01688 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 315

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 613 DEGNSSYYVKVCRDEFIREVRPDVYHCGFCNS-IEHGLDNMLEH 741
           D   +SY+  +C    I  ++ ++  C FC S     +DN  +H
Sbjct: 3   DASETSYWCHMCSRSVIPLIQDEIIKCNFCQSGFVEEMDNNDDH 46


>At5g48060.1 68418.m05938 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1036

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 136 VEVEFRIYNGLYRMMDNSFQCLTCNEVFRLVKTSIQACVTHIF 264
           VEV+   Y G  ++ D        N+VF   K  IQ+ V  +F
Sbjct: 319 VEVKLGNYKGRTKIFDRKTTIPEWNQVFAFTKERIQSSVLEVF 361


>At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1253

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 292 KNWQRLQKMPLILYNLKSLVNISI 363
           +N +RLQ +P+ + NLKSLV + +
Sbjct: 833 QNCKRLQHLPMEISNLKSLVTLKL 856


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,941,106
Number of Sequences: 28952
Number of extensions: 324210
Number of successful extensions: 917
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)