Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1662
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 169 5e-43
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 140 3e-34
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 89 5e-19
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 69 7e-13
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 44 2e-05
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 41 2e-04
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 41 2e-04
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 40 5e-04
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 39 0.001
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 37 0.004
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 34 0.026
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 34 0.026
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 32 0.10
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 31 0.18
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 31 0.24
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 31 0.24
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 30 0.42
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 28 1.3
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 3.9
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 5.2
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 26 5.2
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 5.2
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.9
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 26 6.9
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 9.1
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 9.1
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 169 bits (410), Expect = 5e-43
Identities = 76/84 (90%), Positives = 81/84 (96%)
Frame = +1
Query: 256 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREE 435
PTIGFNVETVEY+NISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRERI EA EE
Sbjct: 47 PTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEE 106
Query: 436 LMRMLSEDELRDAVLLIFANKQDL 507
L RML+EDELRDA+LL+FANKQDL
Sbjct: 107 LQRMLNEDELRDALLLVFANKQDL 130
Score = 97.9 bits (233), Expect = 1e-21
Identities = 43/48 (89%), Positives = 45/48 (93%)
Frame = +3
Query: 510 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 653
NAMNAAEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLS LKN
Sbjct: 132 NAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
Score = 81.8 bits (193), Expect = 1e-16
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = +2
Query: 119 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPLL 265
MG + LF+ LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIP +
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 49
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 140 bits (338), Expect = 3e-34
Identities = 62/84 (73%), Positives = 71/84 (84%)
Frame = +1
Query: 256 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREE 435
PT+GFNVETV YKNI F VWDVGGQDKIRPLWRHYF T+GLIFVVDS D RI EAR+E
Sbjct: 51 PTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQE 110
Query: 436 LMRMLSEDELRDAVLLIFANKQDL 507
L R++S+ E+RD +LL+ ANKQDL
Sbjct: 111 LHRIISDREMRDCLLLVLANKQDL 134
Score = 64.5 bits (150), Expect = 2e-11
Identities = 31/43 (72%), Positives = 34/43 (79%)
Frame = +2
Query: 131 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP 259
F+ F LF KEMRILM+GLDAAGKTTILYKLKL + V TIP
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIP 51
Score = 56.4 bits (130), Expect = 4e-09
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = +3
Query: 513 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 650
A++ A+ITD L L L++R W +Q TCA +GDGL EGL WLS K
Sbjct: 137 ALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 89.4 bits (212), Expect = 5e-19
Identities = 36/85 (42%), Positives = 58/85 (68%)
Frame = +1
Query: 253 NPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEARE 432
+PT GF + T+E + + FT+WD+GGQ +R W++YF++T+ +I+VVDS D R+ E R
Sbjct: 45 SPTFGFQIRTLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRN 104
Query: 433 ELMRMLSEDELRDAVLLIFANKQDL 507
L +L E++L +L+ ANK D+
Sbjct: 105 TLQELLVEEKLLFTSILVLANKSDV 129
Score = 33.9 bits (74), Expect = 0.026
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +2
Query: 161 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI 256
++E+R+L++GLD AGKTTIL K L E V +
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEV 44
Score = 33.5 bits (73), Expect = 0.034
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +3
Query: 507 ANAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNANR*TV 671
+ A+++ EI+ L + ++ +W I + A +G + + + WL+N LK T+
Sbjct: 130 SGALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLKEIKLGTI 184
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 68.9 bits (161), Expect = 7e-13
Identities = 32/83 (38%), Positives = 48/83 (57%)
Frame = +1
Query: 256 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREE 435
PT+ E + N+ FT +D+GG + R LWR YF G++++VD D ER+ E++ E
Sbjct: 50 PTLHPTSEELAIGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAE 109
Query: 436 LMRMLSEDELRDAVLLIFANKQD 504
L +L+ +EL LI NK D
Sbjct: 110 LDALLAMEELARVPFLILGNKID 132
Score = 32.7 bits (71), Expect = 0.060
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPLL 265
K ++L +GLD AGKTT+L+ LK + P L
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTL 52
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 IGFNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREE 435
+ F + T E K + +WD GQ++ R + Y++ G+I V D D++ ++
Sbjct: 43 VDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQW 102
Query: 436 LMRMLSEDELRDAVLLIFANKQDL 507
L + + L+ NK D+
Sbjct: 103 LQE-IDRYAVEGVNRLLVGNKSDM 125
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 41.1 bits (92), Expect = 2e-04
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +1
Query: 247 NNNPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER--IG 420
+ N T+G + + ++ ++DVGGQ R W + F+N +IF V ND ++
Sbjct: 175 SRNSTLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYE 234
Query: 421 EAREELMRMLSEDELRDAVL 480
A E R++ L D+++
Sbjct: 235 RAAPERNRLVESISLFDSII 254
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 262 IGFNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAR 429
I F + T+E K I +WD GQ++ R + Y++ G++ + D D++ R
Sbjct: 44 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 286 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSE 456
+ K I +WD GQ+K R + R+Y++ G + V D +++ EEL LS+
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSF----EELSSWLSD 110
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 38.7 bits (86), Expect = 0.001
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Frame = +1
Query: 241 NCNNNPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 408
N + TIG T ++ K I +WD GQ++ R + Y++ G + V D +
Sbjct: 36 NIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQ 95
Query: 409 ERIGEAREELMRMLSEDELRDAVLLIFANKQDL 507
L + L E + V+++ NK DL
Sbjct: 96 SSFDNVGRWL-KELREHADSNIVIMLVGNKTDL 127
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 36.7 bits (81), Expect = 0.004
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Frame = +1
Query: 259 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF----------VVDSNDR 408
T G + ET + +DVGGQ R W H F+N L+F +V+ N
Sbjct: 221 TTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDNSG 280
Query: 409 ERIGEAREELMRMLSEDELRDAVLLIFANKQDL 507
++ EA + + ++ +++F NK DL
Sbjct: 281 NQMQEALLLWDSICNSSWFSESAMILFLNKLDL 313
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +2
Query: 158 GKKEMRILMVGLDAAGKTTILYKLKL 235
G ++++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 33.9 bits (74), Expect = 0.026
Identities = 17/75 (22%), Positives = 35/75 (46%)
Frame = +1
Query: 283 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDE 462
+E + + +WD GQ++ R L Y +++ I V D + E+ + + +
Sbjct: 55 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAER 113
Query: 463 LRDAVLLIFANKQDL 507
D ++++ NK DL
Sbjct: 114 GDDVIIVLVGNKTDL 128
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 33.9 bits (74), Expect = 0.026
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = +1
Query: 286 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDEL 465
E ++ +WD GQ++ + L Y++N I V D + +A+ ++ L
Sbjct: 60 ENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKELQRQAP 118
Query: 466 RDAVLLIFANKQDL 507
V+ + NK DL
Sbjct: 119 EGIVIALAGNKLDL 132
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 31.9 bits (69), Expect = 0.10
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +1
Query: 283 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLS 453
V+ K ++ +WD GQ++ + L +++ + V D N+ E + R+E + S
Sbjct: 52 VDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQAS 111
Query: 454 EDELRDAVLLIFANKQDL 507
++ NK D+
Sbjct: 112 PSNPETFPFILLGNKVDV 129
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 31.1 bits (67), Expect = 0.18
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = +1
Query: 295 NISFTVWDVGGQDKIRPLW-----RHYFQNTQGLIFVVDSNDRE 411
N+ +WD GGQ+ + H F+N Q LI+V D RE
Sbjct: 50 NLVLNLWDCGGQEAFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 30.7 bits (66), Expect = 0.24
Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 262 IGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEARE 432
+ F +T+ +N I+F++WD+GGQ + + + ++F+ D + + + +E
Sbjct: 45 VNFMEKTISIRNTEITFSIWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 283 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLS 453
V+ K ++ +WD GQ++ + L +++ + V + N+ + + R+E + S
Sbjct: 52 VDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTS 111
Query: 454 EDE 462
+DE
Sbjct: 112 QDE 114
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 29.9 bits (64), Expect = 0.42
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = -1
Query: 213 VVLPAASKPTINILISFLPKRPLNKFANIFPILNYYEYNFQKQSRIREKTQHQ*IPNNSR 34
+++PA P + I++ +L +R NK NI I+NY + EK N ++
Sbjct: 246 IIMPAVMTPAV-IILMYL-ERQANKDENIKKIINY---------QTEEK-------NKNK 287
Query: 33 MSKWRRTWKFV 1
SKW++ WK V
Sbjct: 288 QSKWQKLWKAV 298
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 289 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 408
+ I F VWD GQ+K+ L Y+ Q I + D R
Sbjct: 55 FGEICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSR 94
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -3
Query: 622 PSYSPSPEVAHVAWMYQLRLRSECRPSL-SVISAAFIAFANPVYSQRSKVLHP 467
P+ SP PEV+H W+ L P L S + IAF + + ++ HP
Sbjct: 16 PNSSPDPEVSHKLWVSSLNKFQYTLPLLISNFAGLGIAFIYCLIAFIREMSHP 68
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 176 ILMVGLDAAGKTTILYKLKL 235
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 488 LRINRICKRNERSRDNRQTGSAFAAQP*LVHPSDMRHFRRRTVRGSRLAL 637
+RIN + N+ R +G A A H SD+R + V GS ++
Sbjct: 167 IRINILPNGNDNFIKKRNSGFALAPIACYNHTSDLRKLLKHKVTGSNASI 216
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 140 LFKGLFGKKEMRILMVGLDAAGKTTI 217
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 354 PPQWSDFVLASNIPHSKTNVFVFY 283
PP+ SDF++ S H + N F F+
Sbjct: 257 PPEVSDFLIKSFYGHVQANFFFFH 280
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 283 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI--FVVDSND 405
V+ +I ++WD GQ++ L + +T ++ F VDS D
Sbjct: 56 VDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRD 98
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 9.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +2
Query: 5 NFHVRRHFDIRELLGIHWCC 64
N + HF+ +G +WCC
Sbjct: 469 NHRIPHHFESHTNIGANWCC 488
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIP 259
KE+R+++ G GK++++ L + VT+IP
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIP 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,316,745
Number of Sequences: 5004
Number of extensions: 71713
Number of successful extensions: 253
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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