Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1661
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce...    29   0.82 
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    29   1.1  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    28   1.4  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    26   7.6  

>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 134 FKNPSPLFEARYEFVHGPLCGPA 202
           FK+PSPLF     FV G +  PA
Sbjct: 218 FKDPSPLFRHEIAFVFGQMIAPA 240


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +1

Query: 283 QCIWDLEVEEKRDIWLHFDSIKFSSRHCEDGNIQIYLPGRIEPYLSVCGGNVSE 444
           QCI D  +      WL    I  S  H  DG    +   R+E YL +C  +  E
Sbjct: 747 QCIIDQFIAAGETKWLQRTGIVLSLPHGYDGQGPEHSSARMERYLQLCNEDPRE 800


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -1

Query: 539 PDRPRFLFFHPNGSSKDSNPSSPADRIGNF-SVSE--TLPPQTD 417
           PDR   + F  N ++K +NPSS A++  +F SVSE   LP  TD
Sbjct: 560 PDRYLDMNFDFNDTNKINNPSSTANQTRHFHSVSEIKKLPMGTD 603


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 761 INNAIANQSCWNT*GLVSRANK 696
           + N + +  CW+  GL+SRA+K
Sbjct: 71  LRNDVGSGVCWHIFGLISRADK 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,497,728
Number of Sequences: 5004
Number of extensions: 79183
Number of successful extensions: 204
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)