Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1661
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0303 + 19313395-19313435,19314210-19314714 33 0.37
07_01_0572 + 4239137-4239319,4240861-4241043 31 1.5
04_04_1488 - 33922253-33922361,33922459-33922649,33922752-339241... 31 1.5
12_02_0944 - 24666114-24666200,24666287-24666352,24666450-246665... 30 2.0
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 30 2.6
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 29 6.1
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 29 6.1
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395... 28 8.0
01_07_0037 + 40657449-40658010,40658567-40658901 28 8.0
>06_03_0303 + 19313395-19313435,19314210-19314714
Length = 181
Score = 32.7 bits (71), Expect = 0.37
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 436 VSETEKLPILSAGELGFESLDDPLGWKKRKRGLSGLFLSGVPLQHELRS 582
V+E+ + P +G F LDD L W++R+R L GL L +P + L +
Sbjct: 84 VTESNRNP---SGASFFSPLDDSLAWRQRRRRLEGLLLR-IPYRRTLET 128
>07_01_0572 + 4239137-4239319,4240861-4241043
Length = 121
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 5 LGSCLCAKHANTVSRARPYRVVSSGESLNLQLIVDNAHAAASYFKNPSP 151
LG CL A+ A ARP+R G S ++ VDN +S + P
Sbjct: 25 LGLCLAAQGARPQPVARPHRCGKPGSSRGRRVFVDNMVFISSQWNRQRP 73
>04_04_1488 -
33922253-33922361,33922459-33922649,33922752-33924130,
33924205-33924340,33924427-33924502,33924806-33924925,
33925005-33925082,33925605-33925695,33925805-33925889,
33925977-33926132,33926317-33926373,33926454-33926552,
33926702-33926814,33926924-33927014
Length = 926
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +1
Query: 223 WRNSLSSFRSTGYTEPPKRIQCIWDLEVEEKRDIWLHFDSIKFSSRHCEDGNIQIYLPG 399
WRN + GY E P+R+ IWD+E E ++ S S R C G + +PG
Sbjct: 318 WRNLQVEWDEHGYGERPERVS-IWDIETPENTLVFP--SSTLNSKRQCLPG-YGVSVPG 372
>12_02_0944 -
24666114-24666200,24666287-24666352,24666450-24666515,
24666607-24666825,24666927-24667403
Length = 304
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +1
Query: 433 NVSETEKLPILSAGELGFESLDDPLGWKKRKRGLSGLF 546
NV L GELG E LD G KRK+ G F
Sbjct: 117 NVIPNHSLDSFGNGELGHEDLDSVSGTNKRKQSAEGEF 154
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 179 HGPLCGPAVLIAASDGEIVYPH-LEAPVTLN 268
HGP C V+IA+ DG+IV + L+A V ++
Sbjct: 193 HGPFCSGGVVIASQDGKIVCDNTLDARVEIS 223
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 451 KLPILSAGELGFESLDDPLGWKKRKRGLSGLFLSGVPLQHELRSKLLGRVCIIYLKT 621
KL + A + S L W + K+ LS ++G+P+ + S GRV I + T
Sbjct: 2711 KLNVAEAHAVCLSSQGVILVWNESKKRLSTFTVNGLPIATTVLSPFCGRVSCIEIST 2767
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 149 PLFEARYEFVHGPLCGPAVLIAASDGEIV 235
P + YE HGP C V++A+ DG+IV
Sbjct: 184 PPAPSHYE-AHGPSCSGGVVLASRDGKIV 211
>07_03_0539 -
19237573-19239169,19239258-19239410,19239505-19239566,
19239855-19240103,19240248-19240337,19240453-19240632,
19240713-19240942,19241558-19241735,19242327-19242432,
19242786-19242883,19243683-19243813,19243908-19244087,
19244179-19244443,19244557-19244627,19244707-19244922,
19245147-19245294
Length = 1317
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -1
Query: 605 IQTRPSNFERSSCWRGTPDKNNPDRPRFLFFHPNGSSKD-SNPSSPADRIGNFSVSETLP 429
+ P+ S +G+ + R L F +S D + SP+D GN+ +SE +
Sbjct: 300 VSPSPAPIRASGSSKGSSYPRSGGRSHQLTFSSTSASNDRESDRSPSDADGNYEISEEMM 359
Query: 428 PQTD 417
+ D
Sbjct: 360 QEMD 363
>01_07_0037 + 40657449-40658010,40658567-40658901
Length = 298
Score = 28.3 bits (60), Expect = 8.0
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 229 NSLSSFRSTGYTEPPKRIQCIWDLEVEEKR 318
N++++ G PP R++ WD+ E++R
Sbjct: 104 NAVAAGEGEGEAPPPPRLESFWDMRGEQRR 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,309,710
Number of Sequences: 37544
Number of extensions: 505775
Number of successful extensions: 1140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -