Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1661
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-9|CAL64002.1|  312|Caenorhabditis elegans Hypothetical pr...    33   0.33 
Z68220-8|CAA92487.1|  221|Caenorhabditis elegans Hypothetical pr...    33   0.33 
Z81564-11|CAB04576.1|  436|Caenorhabditis elegans Hypothetical p...    32   0.44 
AF025457-6|AAB70960.1|  333|Caenorhabditis elegans Hypothetical ...    31   1.0  
AF039038-5|AAK29711.1|  604|Caenorhabditis elegans Cell division...    31   1.3  
U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astaci...    30   2.3  
AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z92832-4|CAB07373.1|  488|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z82283-3|CAB05283.1|  485|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U67949-2|AAB07560.2|  368|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>Z68220-9|CAL64002.1|  312|Caenorhabditis elegans Hypothetical
           protein T20D3.5b protein.
          Length = 312

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +2

Query: 143 PSPLFEARYEFVHGPLCGPAVLIAASDGEIVYPHLEAPVTLNHQNVFNVF-GI*RLRKKE 319
           P  L +   +FV G L G  +  A     ++  H++A V + +++ F VF  + +LR + 
Sbjct: 216 PESLQQLIGDFVAGSLLGATISTAFFPLGVIKNHMQAKVGVKYESGFKVFRDVWQLRNRS 275

Query: 320 IFG-YISTVSNFLRDI 364
           + G Y+    NF R +
Sbjct: 276 LRGLYLGVHLNFTRSL 291


>Z68220-8|CAA92487.1|  221|Caenorhabditis elegans Hypothetical
           protein T20D3.5a protein.
          Length = 221

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +2

Query: 143 PSPLFEARYEFVHGPLCGPAVLIAASDGEIVYPHLEAPVTLNHQNVFNVF-GI*RLRKKE 319
           P  L +   +FV G L G  +  A     ++  H++A V + +++ F VF  + +LR + 
Sbjct: 125 PESLQQLIGDFVAGSLLGATISTAFFPLGVIKNHMQAKVGVKYESGFKVFRDVWQLRNRS 184

Query: 320 IFG-YISTVSNFLRDI 364
           + G Y+    NF R +
Sbjct: 185 LRGLYLGVHLNFTRSL 200


>Z81564-11|CAB04576.1|  436|Caenorhabditis elegans Hypothetical
           protein K05C4.11 protein.
          Length = 436

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +3

Query: 570 RASFKIAWTGLYHLPKNSDGSLMTSRLTGEGMKPTDSGQGC----DFICPGDEALCIPAR 737
           R  FK+ WT +  L    D S+  +    + M     GQ C      IC     LCI + 
Sbjct: 292 RIGFKVVWTAVEGLIGEGDESVNGNSCKDQFM--CHGGQVCVEQGHGICASRSRLCIHSS 349

Query: 738 LICNGVVN 761
           L+C+G+ N
Sbjct: 350 LVCDGIHN 357


>AF025457-6|AAB70960.1|  333|Caenorhabditis elegans Hypothetical
           protein C08E3.7 protein.
          Length = 333

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +1

Query: 448 EKLPILS---AGELGFESLDDPLGWKKRKRGLSGLFLSGVPLQHEL 576
           EKL ++     G +GFE L +   WKK K+   GL+   +P++H L
Sbjct: 199 EKLEVIDFKGEGSVGFEQLINSDQWKKAKK-FDGLWSLSIPIEHFL 243


>AF039038-5|AAK29711.1|  604|Caenorhabditis elegans Cell division
           cycle related protein25.1 protein.
          Length = 604

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 125 ASYFKNPSPLFEARYEFVHGPLCGPAV-LIAASDGEIVYPHLEAP 256
           AS F+N  P+F   Y    GP    AV  I     E+ YPH+E P
Sbjct: 348 ASSFQNRVPIFYCEYSQKRGPTMAHAVRSIDRVLNELRYPHVEYP 392


>U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astacin
           protease protein39 protein.
          Length = 951

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 193 WSCGSDCSV*WRNSLSSFRSTGYTEP-PKRIQCIWDLEVEEKRDIWLHF 336
           +SC S C    + S  S  S  + E  P    CIW++E  +   I+L+F
Sbjct: 536 FSCDSTCGGYLKASNGSISSPNFPEMYPNSKTCIWEIEAPDGYHIFLNF 584


>AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical
           protein Y92H12A.2 protein.
          Length = 724

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 608 MIQTRPSNFERSSCWRGTPDKNNPDRPRFLFFHPNGSSKDSNPS-SPAD 465
           +I T+  N E  +   GT  K       FL FH   SS D++PS S AD
Sbjct: 113 LITTQAPNPEEYALQSGTASKGKSIGSLFLSFHFMPSSSDNSPSDSTAD 161


>Z92832-4|CAB07373.1|  488|Caenorhabditis elegans Hypothetical
           protein F31D4.5 protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 254 VLLNEDKLFLHQTLQSEPQDHKEVHER 174
           VLLNE+K    + L++E +  KE H+R
Sbjct: 213 VLLNEEKKSYEERLEAEAKARKEEHDR 239


>Z82283-3|CAB05283.1|  485|Caenorhabditis elegans Hypothetical
           protein T23G4.3 protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 379 IQIYLPGRIEPYLSVCGGNVSETEKLPILSA 471
           +++YLP   E ++S CG  VS+ + LPI  A
Sbjct: 299 VKVYLPKYYEDFVSDCG--VSKVDDLPITEA 327


>Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical
           protein T01E8.5 protein.
          Length = 1270

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 257 VTLNHQNVF--NVFGI*RLRKKEIFGYISTVSNFLRDIARMVTFKYI 391
           V L H N+   N++G    R KE   +   +  +L+D+ +   F+Y+
Sbjct: 267 VGLEHNNILFNNIYGAEYARDKENRPFWEQLDRYLKDVPKETFFRYV 313


>Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical
           protein T01E8.5 protein.
          Length = 1270

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 257 VTLNHQNVF--NVFGI*RLRKKEIFGYISTVSNFLRDIARMVTFKYI 391
           V L H N+   N++G    R KE   +   +  +L+D+ +   F+Y+
Sbjct: 267 VGLEHNNILFNNIYGAEYARDKENRPFWEQLDRYLKDVPKETFFRYV 313


>U67949-2|AAB07560.2|  368|Caenorhabditis elegans Hypothetical
           protein F55A4.2 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 504 IRMEKEKTRSIRIVFIGSASPARASFKI 587
           IR  K    S  IVF+ SASP R  F I
Sbjct: 329 IRKSKRSDTSSNIVFLSSASPKRPKFLI 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,194,655
Number of Sequences: 27780
Number of extensions: 440976
Number of successful extensions: 1132
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)