Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1661
         (836 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar t...    31   1.3  
At1g69900.1 68414.m08044 expressed protein  contains Pfam profil...    30   2.2  
At3g59910.1 68416.m06686 expressed protein                             29   3.8  
At1g79540.1 68414.m09272 pentatricopeptide (PPR) repeat-containi...    29   3.8  
At3g49290.1 68416.m05387 expressed protein                             29   5.1  
At1g27460.1 68414.m03348 calmodulin-binding protein similar to c...    28   8.8  
At1g18620.1 68414.m02321 expressed protein                             28   8.8  

>At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar to
           Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
           thaliana]
          Length = 917

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 430 RRRPIDMVLFF--QVDIFECYHPRNVSKKI*YCRNVTKYLFFPQPLNPKYIEYVLV 269
           R RP D+ +    +  I EC  P    K++ +   VT   F+  P+NPK  +YV +
Sbjct: 524 RIRPCDITINIGKEAPIPECPIPGERWKEVKHDNTVTWLAFWSDPINPKEFKYVFL 579


>At1g69900.1 68414.m08044 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 397

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +1

Query: 166 IRIRSWTSLWSCGSDCSV*WRNSLSSFRSTGYTEPPKRIQCIWDLEVEEKRDIWLHFDSI 345
           +++ SW   +  G+  +  WRNS++  R    +   K I  +W +EV E  D  L  D  
Sbjct: 104 VKLMSWNEKYLRGNGGAPPWRNSVTCDREPHISATKKWI--LWSVEVVENPDKVLFAD-- 159

Query: 346 KFSS 357
           +FSS
Sbjct: 160 RFSS 163


>At3g59910.1 68416.m06686 expressed protein
          Length = 611

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 564 PARASFKIAWTGLYHLPKNSDGSLMTSRLTGEGMKPTDSGQGC 692
           PA     IA+  LY     +DG L++ RL G+ ++     QGC
Sbjct: 543 PAPLRVAIAYMPLYRECMKADGRLLSQRLRGQLVEAVRQLQGC 585


>At1g79540.1 68414.m09272 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 780

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 555 SASPARASFKIAWTGLYHLPKNSDGSLMTSRLTGEGMKP 671
           + SP   +F I   GLY   + SD   M   +TG G+ P
Sbjct: 193 NCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISP 231


>At3g49290.1 68416.m05387 expressed protein
          Length = 312

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 500 SSKDSNPSSPADRIGNFSVSETLPPQTDRYGSILPGRY 387
           +S+ S+P  P  R   FS + T+P +     S+ P R+
Sbjct: 186 TSQSSSPRQPPQRSATFSFTSTIPKKEQDKRSVSPHRF 223


>At1g27460.1 68414.m03348 calmodulin-binding protein similar to
           calmodulin-binding protein MPCBP [Zea mays] GI:10086260;
           contains Pfam profile PF00515: TPR Domain
          Length = 694

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 337 DSIKFSSRHCEDGNIQI-YLPGRIEPYLSVCGGNVSETEKL 456
           D I F+ R  + GN Q  +L  +   +L VC GN + + KL
Sbjct: 364 DGINFAHRLLDLGNSQSEHLLSQAHKFLGVCYGNAARSSKL 404


>At1g18620.1 68414.m02321 expressed protein
          Length = 978

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = -1

Query: 377 LPSSQCLEENL--ILSKCNQISLFSSTSKSQIH*IRFGGSV*PVLLNEDKLFLHQTLQSE 204
           L SS  L E L  + ++C+++S  SS S S          V P +  +D++   ++  S+
Sbjct: 77  LVSSNGLSEKLTRLSTECSRVSFSSSCSSSSPLSSEVNREVQPEISADDRVIFPESPTSD 136

Query: 203 PQDHKEVHERIRI*LQREVRD 141
           P   +    R+ + L+  VRD
Sbjct: 137 PVMSQGTGARVGLDLRDVVRD 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,181,137
Number of Sequences: 28952
Number of extensions: 413056
Number of successful extensions: 1074
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)