Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1658
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 131 1e-31
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 111 1e-25
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 102 6e-23
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 100 2e-22
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 94 2e-20
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 89 5e-19
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 83 3e-17
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 83 3e-17
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 83 4e-17
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 77 3e-15
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 75 8e-15
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 75 1e-14
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 72 1e-13
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 70 4e-13
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 69 7e-13
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 67 2e-12
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 67 3e-12
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 66 4e-12
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 66 5e-12
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 59 7e-10
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 40 5e-04
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 33 0.031
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 33 0.042
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 32 0.073
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 31 0.17
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 31 0.17
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 31 0.22
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 31 0.22
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.51
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.68
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 29 0.89
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 29 0.89
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.2
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 28 1.2
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 28 1.6
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 28 1.6
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.6
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.1
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 27 2.7
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 27 3.6
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 26 4.8
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 26 4.8
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 26 4.8
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 26 6.3
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 6.3
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 6.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 6.3
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 8.3
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar... 25 8.3
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 25 8.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 8.3
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 131 bits (316), Expect = 1e-31
Identities = 63/73 (86%), Positives = 67/73 (91%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDK 687
+VIELPL NPELF+RVGI PPKG LLYGPPGTGKTLLARAVA+ L NFLKVVSSAIVDK
Sbjct: 146 EVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDK 205
Query: 688 YIGESARLIREMF 726
YIGESAR+IREMF
Sbjct: 206 YIGESARIIREMF 218
Score = 118 bits (285), Expect = 6e-28
Identities = 53/77 (68%), Positives = 66/77 (85%)
Frame = +2
Query: 251 LEQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVY 430
L+QL E+FIVKA++GPRYVVGCR +D++ L G RV+LDMTTLTIMR LPREVDPLVY
Sbjct: 60 LKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVY 119
Query: 431 NMSHEDPGDVTYSAIGG 481
NMS EDPGD++++ +GG
Sbjct: 120 NMSIEDPGDISFAGVGG 136
Score = 68.9 bits (161), Expect = 7e-13
Identities = 30/57 (52%), Positives = 46/57 (80%)
Frame = +3
Query: 84 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVL 254
R+ A + Y+ L++H+E +S+LK+ R +DL K+YDK+E+D+K+LQSVGQI+GEVL
Sbjct: 4 RDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVL 60
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 111 bits (266), Expect = 1e-25
Identities = 46/73 (63%), Positives = 63/73 (86%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDK 687
+V+ELPL++PE FV++GI PPKG +LYGPPGTGKTL ARAVA++ DA F++V+ S +V K
Sbjct: 193 EVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 252
Query: 688 YIGESARLIREMF 726
Y+GE AR++RE+F
Sbjct: 253 YVGEGARMVRELF 265
Score = 43.2 bits (97), Expect = 4e-05
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 254 EQLTEEK-FIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVY 430
EQ E+ +++ ++VV ++ ++ G RV D I LP ++DP V
Sbjct: 107 EQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVT 166
Query: 431 NMSHEDPGDVTYSAIGG 481
M E+ DVTY +GG
Sbjct: 167 MMQVEEKPDVTYGDVGG 183
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 102 bits (244), Expect = 6e-23
Identities = 46/74 (62%), Positives = 58/74 (78%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD 684
++VIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA D F++V S +V
Sbjct: 158 KEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQ 217
Query: 685 KYIGESARLIREMF 726
KYIGE +R++RE+F
Sbjct: 218 KYIGEGSRMVRELF 231
Score = 47.2 bits (107), Expect = 2e-06
Identities = 26/77 (33%), Positives = 41/77 (53%)
Frame = +2
Query: 251 LEQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVY 430
++ + + K +VK +YVV +D ++K RVAL + +++ LP +VDPLV
Sbjct: 73 IKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVS 132
Query: 431 NMSHEDPGDVTYSAIGG 481
M E D TY +GG
Sbjct: 133 LMMVEKIPDSTYEMVGG 149
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 100 bits (239), Expect = 2e-22
Identities = 42/74 (56%), Positives = 59/74 (79%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD 684
++ +ELPL +PEL+ +GI PPKG +LYG PGTGKTLLA+AVA+Q A FL+VV S ++
Sbjct: 204 KEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQ 263
Query: 685 KYIGESARLIREMF 726
KY+G+ RL+R++F
Sbjct: 264 KYLGDGPRLVRQLF 277
Score = 42.7 bits (96), Expect = 5e-05
Identities = 27/108 (25%), Positives = 49/108 (45%)
Frame = +2
Query: 248 SLEQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLV 427
+LE++ ++ + +T GP Y V +DK+ L+ G V L ++I+ L + DP++
Sbjct: 118 TLEEIIDDDHAIVSTAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMI 177
Query: 428 YNMSHEDPGDVTYSAIGGXXXXXXXXXXXXNFP**TQSCLFESVSLHP 571
M + +Y+ IGG P T L+E + + P
Sbjct: 178 NVMKLDKAPTESYADIGGLESQIQEIKEAVELP-LTHPELYEEMGIKP 224
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 94.3 bits (224), Expect = 2e-20
Identities = 39/73 (53%), Positives = 56/73 (76%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDK 687
+ +ELPL +L+ ++GI PP+G LLYGPPGTGKT+L +AVA+ ANF++VV S V K
Sbjct: 148 EAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQK 207
Query: 688 YIGESARLIREMF 726
Y+GE R++R++F
Sbjct: 208 YLGEGPRMVRDVF 220
Score = 46.8 bits (106), Expect = 3e-06
Identities = 30/107 (28%), Positives = 47/107 (43%)
Frame = +2
Query: 251 LEQLTEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVY 430
LE + + IV +T G YVV LD+ LK VAL + ++ LP E D +
Sbjct: 62 LEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSIS 121
Query: 431 NMSHEDPGDVTYSAIGGXXXXXXXXXXXXNFP**TQSCLFESVSLHP 571
+ ++ DV+Y+ +GG P TQ L+ + + P
Sbjct: 122 MLRPDERPDVSYADVGGLDVQKQEVREAVELP-LTQGDLYRQIGIDP 167
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +3
Query: 108 RKKLMEHKEVESRLKEG--RDQLKDLTKQYDKSENDLKALQSVGQIVGEVLNS 260
R K +E + L+EG ++ K L ++ +++ ++K +QSV ++G+ L +
Sbjct: 12 RWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEA 64
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 89.4 bits (212), Expect = 5e-19
Identities = 37/73 (50%), Positives = 55/73 (75%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDK 687
+ I LP+ + F ++G+ PPKGCL++GPPGTGKTLLARA A+Q +A FLK+ + +V
Sbjct: 199 EAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQM 258
Query: 688 YIGESARLIREMF 726
+IG+ A+L+R+ F
Sbjct: 259 FIGDGAKLVRDAF 271
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 83.4 bits (197), Expect = 3e-17
Identities = 35/72 (48%), Positives = 51/72 (70%)
Frame = +1
Query: 511 VIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKY 690
++ELP NPELF I PP+G LLYGPPGTGKT++ RAVA++ +A + ++V KY
Sbjct: 294 IVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAAEANAQVFTIDGPSVVGKY 353
Query: 691 IGESARLIREMF 726
+GE+ +R++F
Sbjct: 354 LGETESRLRKIF 365
Score = 82.6 bits (195), Expect = 5e-17
Identities = 34/71 (47%), Positives = 50/71 (70%)
Frame = +1
Query: 514 IELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYI 693
+E PL + E F R+G+ PPKG LLYGPPG KT+ A+A+A++ NF+ V + DK++
Sbjct: 564 VEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAKAIATETGLNFIAVKGPELFDKFV 623
Query: 694 GESARLIREMF 726
GES R +R++F
Sbjct: 624 GESERAVRQVF 634
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 83.4 bits (197), Expect = 3e-17
Identities = 36/74 (48%), Positives = 53/74 (71%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD 684
+ I P+ PEL+ VGI+ P G LL+GPPG GKTLLA+AVA++ ANF+ + +++
Sbjct: 505 QMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAVANESKANFISIRGPELLN 564
Query: 685 KYIGESARLIREMF 726
KY+GES R +R++F
Sbjct: 565 KYVGESERAVRQVF 578
Score = 75.4 bits (177), Expect = 8e-15
Identities = 31/73 (42%), Positives = 52/73 (71%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDK 687
+++ +P+ +PE++ GI PP+G LL+GPPG GKT+LA A+A++L F+ + + +IV
Sbjct: 188 ELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLANALANELGVPFISISAPSIVSG 247
Query: 688 YIGESARLIREMF 726
GES + +RE+F
Sbjct: 248 MSGESEKKVREVF 260
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 83.0 bits (196), Expect = 4e-17
Identities = 37/73 (50%), Positives = 52/73 (71%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDK 687
+++ELPL +P+LF +GI PP+G L+YGPPGTGKTL+ARAVA++ A F + I+ K
Sbjct: 238 ELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSK 297
Query: 688 YIGESARLIREMF 726
GES +R+ F
Sbjct: 298 MAGESESNLRKAF 310
Score = 81.4 bits (192), Expect = 1e-16
Identities = 33/73 (45%), Positives = 52/73 (71%)
Frame = +1
Query: 508 KVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDK 687
+ +++P+M E F+R G+TP KG L +GPPGTGKTLLA+A+A++ ANF+ V ++
Sbjct: 511 ETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLLAKAIANECSANFISVKGPELLSM 570
Query: 688 YIGESARLIREMF 726
+ GES +R++F
Sbjct: 571 WFGESESNVRDIF 583
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 77.0 bits (181), Expect = 3e-15
Identities = 35/71 (49%), Positives = 50/71 (70%)
Frame = +1
Query: 514 IELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYI 693
++LPL PELF + G+ P G LLYGPPGTGKTLLA+AVA++L F+ + +++ Y+
Sbjct: 671 LQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKAVATELSLEFVSIKGPELLNMYV 729
Query: 694 GESARLIREMF 726
GES +R +F
Sbjct: 730 GESEANVRNVF 740
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 580 LLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD 684
LL+G P TGKT VAS A + S D
Sbjct: 426 LLHGNPFTGKTKAVEEVASLFSAPVFTISSYEFAD 460
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 75.4 bits (177), Expect = 8e-15
Identities = 33/74 (44%), Positives = 52/74 (70%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD 684
++ + P + PELF + P +G LL+GPPGTGKT+LARAVA++ A F + +S++
Sbjct: 392 KEAVIYPFLRPELFQGLR-EPVQGMLLFGPPGTGKTMLARAVATEAKATFFSISASSLTS 450
Query: 685 KYIGESARLIREMF 726
KY+G+S +L+R +F
Sbjct: 451 KYLGDSEKLVRALF 464
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 74.9 bits (176), Expect = 1e-14
Identities = 35/74 (47%), Positives = 52/74 (70%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD 684
++ + LP+ P+LF G P G LLYGPPGTGK+ LA+AVA++ + F + SS +V
Sbjct: 142 KETVLLPIKLPQLFSH-GRKPWSGILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVS 200
Query: 685 KYIGESARLIREMF 726
K++GES RL+R++F
Sbjct: 201 KWMGESERLVRQLF 214
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 71.7 bits (168), Expect = 1e-13
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD 684
++ + P + P+LF + P +G LL+GPPGTGKT+LARAVA++ + F + +S++
Sbjct: 472 KEAVVYPFLRPDLFQGLR-EPARGMLLFGPPGTGKTMLARAVATESRSVFFSISASSLTS 530
Query: 685 KYIGESARLIREMF 726
K++GES +L+R +F
Sbjct: 531 KFLGESEKLVRALF 544
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 69.7 bits (163), Expect = 4e-13
Identities = 34/70 (48%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Frame = +1
Query: 523 PLMNPELFVRVG--ITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIG 696
PL PE+F G ++ PKG LLYGPPG GKT+LA+A+A Q A F+ V + DK+ G
Sbjct: 108 PLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKALAKQSQATFINVSVGLLTDKWFG 167
Query: 697 ESARLIREMF 726
ES +L+ +F
Sbjct: 168 ESNKLVDALF 177
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 68.9 bits (161), Expect = 7e-13
Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 5/79 (6%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV-----VS 669
++++ LPL+ PE+F+ + ITPP+G L +GPPGTGKTL+AR +A+ K+
Sbjct: 385 KEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARVLAANCSTKNQKISFFLRKG 444
Query: 670 SAIVDKYIGESARLIREMF 726
S + K++GE+ R +R +F
Sbjct: 445 SDCLSKWVGEAERQLRLLF 463
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 67.3 bits (157), Expect = 2e-12
Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 5/79 (6%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKV-----VS 669
++++ LPL+ PE+F R + PP+G L +GPPGTGKTL+ARA+A+ + KV
Sbjct: 279 KEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALAAACSSENKKVSFYMRKG 338
Query: 670 SAIVDKYIGESARLIREMF 726
+ + K++GE+ R +R +F
Sbjct: 339 ADCLSKWVGEAERQLRLLF 357
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 69 DMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYD 194
+++PL +AFQD K L + V S+L + + D K+ D
Sbjct: 544 ELKPLLNEAFQDIEKTLQKLMPVASKLNPLEEVMYDDPKEND 585
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 66.9 bits (156), Expect = 3e-12
Identities = 32/74 (43%), Positives = 48/74 (64%)
Frame = +1
Query: 505 EKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD 684
E++++ L +P F R+G P+G LL GPPGTGKT+LARAVA + + F + S +
Sbjct: 280 EEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGEANVPFFFMSGSQFDE 338
Query: 685 KYIGESARLIREMF 726
Y+G A+ +RE+F
Sbjct: 339 MYVGVGAKRVRELF 352
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 66.5 bits (155), Expect = 4e-12
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Frame = +1
Query: 493 D*TAEKVIELP--LMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVV 666
D E+++E L NP+ + R+G P+G +L GPPGTGKTLLA+A A + + FL V
Sbjct: 302 DEAKEEIMEFVKFLKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVS 361
Query: 667 SSAIVDKYIGESARLIREMF 726
S ++ ++G +R++F
Sbjct: 362 GSEFLEMFVGVGPSRVRDLF 381
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 66.1 bits (154), Expect = 5e-12
Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Frame = +1
Query: 526 LMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSS-AIVDKYIGES 702
L P + ++GI KG LLYGPPGTGKTL+AR + L+A K+V+ I++KY+G+S
Sbjct: 290 LFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGQS 349
Query: 703 ARLIREMF 726
+R++F
Sbjct: 350 EENVRKLF 357
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 580 LLYGPPGTGKTLLARAVASQLDANFLKVVSS 672
LL GP +GKT LA +A + F+K+VS+
Sbjct: 589 LLSGPIASGKTALAATIALGSEFPFVKLVSA 619
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 58.8 bits (136), Expect = 7e-10
Identities = 26/72 (36%), Positives = 44/72 (61%)
Frame = +1
Query: 511 VIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKY 690
+IE P+ ++ + + P G LL+G PG GKT LA A++S F+ + ++DKY
Sbjct: 621 IIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASAISSTFPVQFISIKGPELLDKY 680
Query: 691 IGESARLIREMF 726
IG+S + +R++F
Sbjct: 681 IGKSEQGVRDLF 692
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +1
Query: 526 LMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLD 645
L N + + GI +G LLYGPPG+GKT A+A +LD
Sbjct: 228 LRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGELD 267
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 33.5 bits (73), Expect = 0.031
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 60 STSDMEPLREKAFQDYRK-KLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ 224
S + +E ++K F+ Y+K + E K+ E R+K+ LKD T +K + K+++
Sbjct: 48 SMAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEKSLKDETMDDEKRKQCEKSMR 103
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 33.1 bits (72), Expect = 0.042
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 583 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVD 684
L GPPG GKT + +++AS L+ F + + D
Sbjct: 576 LVGPPGVGKTSVGKSIASALNREFFRFSVGGLTD 609
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 32.3 bits (70), Expect = 0.073
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 87 EKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDL 212
+K +D RKKL E +E ES L+ R++L+ +S NDL
Sbjct: 571 DKLVEDVRKKLQEKEEAESSLRSVRERLEIRISLSVQSINDL 612
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 31.1 bits (67), Expect = 0.17
Identities = 17/66 (25%), Positives = 35/66 (53%)
Frame = +3
Query: 57 ASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQ 236
A+ SD++ + + Y ++L + K++ ++ + Q + + ++Y E L ALQ +
Sbjct: 531 ANLSDVKAKVSEIRKAYDEELAKAKQISLDIETNKAQTEQVNREYSILEATLNALQKQNK 590
Query: 237 IVGEVL 254
GEVL
Sbjct: 591 QKGEVL 596
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 547 VRVGITPPKGCLLYGPPGTGKTLLARAVASQL--DANFLKVVSSAIVDKYIGESARLIRE 720
++ G + L+ GPP TGKT +A +A L D F+ + +S + + ++ L++
Sbjct: 58 IQEGRIAGRAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEVYSLEMSKTEALLQA 117
Query: 721 M 723
+
Sbjct: 118 L 118
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 30.7 bits (66), Expect = 0.22
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +1
Query: 565 PPKGCLLYGPPGTGKTLLARAVASQL--DAN-FLKVVSSAIVDKY 690
P L GP GTGKTLL +A+AS + D N +++ S ++K+
Sbjct: 613 PIASFLFCGPSGTGKTLLTKALASFMFDDENAMIRIDMSEYMEKH 657
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 30.7 bits (66), Expect = 0.22
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 580 LLYGPPGTGKTLLARAVASQLDANFLKVVSSA 675
+L+G GTGKT LAR +A + F+++ +++
Sbjct: 124 ILWGSAGTGKTTLARLIAVTTKSRFIEISATS 155
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 29.5 bits (63), Expect = 0.51
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 78 PLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQS 227
PL YRK L K+V+ L E + LK L K+ K +ND + L++
Sbjct: 184 PLYPNGQPKYRKILENGKKVKYLLDENGEILKRLVKKEKKLKNDNERLEN 233
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.1 bits (62), Expect = 0.68
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 66 SDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLK-ALQSVGQIV 242
S E +RE+ Q KKL + + ++SRL + R Q++ Y S + LK + S+ Q V
Sbjct: 404 SSCETIREEN-QKNIKKLNDAESLKSRLLQSRTQMQTELDSYITSNSQLKDEITSLKQTV 462
Query: 243 GE 248
E
Sbjct: 463 SE 464
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 28.7 bits (61), Expect = 0.89
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 547 VRVGITPPKGCLLYGPPGTGKTLLARAVASQL 642
VR ++ P L+ GPPGTGKT+ + +V L
Sbjct: 401 VRAVLSKPLS-LIQGPPGTGKTVTSASVVYHL 431
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 28.7 bits (61), Expect = 0.89
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 580 LLYGPPGTGKTLLARAVASQL 642
L YGPPGTGKT A A ++
Sbjct: 60 LFYGPPGTGKTSTILACARKI 80
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +1
Query: 580 LLYGPPGTGKTLLARAVASQLDANFLK 660
++ GP G+GKT +A+AV+ +L +++
Sbjct: 18 VVIGPAGSGKTTMAKAVSEKLGFEYIE 44
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1
Query: 571 KGCLLYGPPGTGKTLLARAVA 633
K LL GPPG GKT A VA
Sbjct: 410 KAVLLSGPPGIGKTTAAHLVA 430
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 547 VRVGITPPKGCLLYGPPGTGKTLLARAVASQL 642
V+ I + L++GPPGTGKT + QL
Sbjct: 218 VKFSIAVKELSLIHGPPGTGKTHTLVEIIQQL 249
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 538 ELFVRVGITPPKGCLLY--GPPGTGKTLLARAVASQLDANFLKV 663
E F R + G LY G PGTGKT+L V + +++ KV
Sbjct: 180 ESFFRQHLDANAGGALYVSGAPGTGKTVLLHNVLDHVVSDYPKV 223
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/68 (23%), Positives = 34/68 (50%)
Frame = +1
Query: 475 RRSSRTD*TAEKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANF 654
R++ RT ++K + +P+++ PP + GPPGTGK+ L +++ +
Sbjct: 46 RQAMRTADISQKKLHVPMVDR---TPDEAPPPVIVAVMGPPGTGKSTLIKSLVRRYSKYT 102
Query: 655 LKVVSSAI 678
+ ++ I
Sbjct: 103 ISQITGPI 110
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 481 SSRTD*TAEKVIELPLMNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLK 660
S +D T + LMN +R + K LL G PG GKT L A+A + ++
Sbjct: 1531 SVESDSTYSLHTDTTLMNASKVLRA-LQVLKPILLEGSPGVGKTSLITALARETGHQLVR 1589
Query: 661 V 663
+
Sbjct: 1590 I 1590
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 589 GPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYI 693
GP G+GK+ LA A+ ++L VV ++ D Y+
Sbjct: 32 GPQGSGKSTLASALDTELTRKNESVVKFSLDDFYL 66
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -1
Query: 238 ICPTLCKAFRSFSLLSYCLVKSFSWSRP---SLSRDSTSLCSMSFFL*SWKA 92
+ PTL + RS S+L + L KSF+ + P + +R T +MS S+ A
Sbjct: 410 VTPTLHRNERSMSVLPFQLAKSFTSALPRRLTFNRTHTKASTMSLPYLSYNA 461
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 580 LLYGPPGTGKTLLARAVA 633
++ G PGTGKT LA VA
Sbjct: 12 IICGTPGTGKTTLAEQVA 29
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/28 (32%), Positives = 21/28 (75%)
Frame = -2
Query: 624 PREQSLSCTRRSVQQTSFGWSDTDSNKQ 541
PRE++++ TR++ ++ +SD+D+ +Q
Sbjct: 216 PREENVTITRKTKLSSNILYSDSDTERQ 243
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 580 LLYGPPGTGKTLLARAVASQL 642
L YG PGTGKT A++ +L
Sbjct: 56 LFYGSPGTGKTSTILALSREL 76
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 568 PKGCLLYGPPGTGKTLL 618
PKG LYG G GKT L
Sbjct: 118 PKGIYLYGDVGCGKTAL 134
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 580 LLYGPPGTGKTLLARAVASQL 642
L+ GPPGTGKT + S L
Sbjct: 1149 LIQGPPGTGKTKTIIGIISAL 1169
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +3
Query: 159 RDQLKDLTKQYDKSENDLKAL-QSVGQIVGEVLNSS 263
RD+L+DL+++ + +NDL+ L Q+V E++ SS
Sbjct: 40 RDELEDLSEEDLQLKNDLELLVQAVQDATPELVGSS 75
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 589 GPPGTGKTLLARAVASQLDAN 651
GP GTGKT +AV++ L N
Sbjct: 1890 GPAGTGKTETVKAVSAYLGKN 1910
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 544 FVRVGITPPKGCLLYGPPGTGKTLL 618
F+ +T + + GPPG+GK++L
Sbjct: 2505 FLNFSLTKNRCVIFCGPPGSGKSML 2529
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 481 SSRTD*TAEKVIELPLMN-PELFVRVGITPPKG-CLLYGPPGTGKT 612
S+ TD +K+++ +N P+ + + G L+ GPPGTGKT
Sbjct: 1255 SNFTDDKKQKIMKSYGVNEPQAYAIYASSVNDGFTLIQGPPGTGKT 1300
>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 69 DMEPLREKAFQDYRKKLMEHKEV 137
D+ L ++ F+D RK L EH+ V
Sbjct: 58 DLNNLSDEQFEDIRKALFEHQVV 80
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 565 PPKGCLLYGPPGTGKTLLARAVASQL 642
P L GP G GKT L +A+A L
Sbjct: 531 PLASFLFLGPTGVGKTALTKALAEFL 556
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 123 EHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEV 251
E + +R+ + ++Q+KDL+ D DL+ L+S+ V +
Sbjct: 1616 ERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRTLRSLEDSVASL 1658
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,259
Number of Sequences: 5004
Number of extensions: 59128
Number of successful extensions: 269
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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