Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1658
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 81  LREKAFQDYRKKLMEHKEVESR 146
           +RE+  + YR+ L+EHK+  +R
Sbjct: 139 IREQTEEMYREMLLEHKKRRAR 160


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 655 KS*HRAVKPQPSRAKSFLYQEV 590
           K  HRA++P+P  A+  + Q +
Sbjct: 629 KKKHRAIRPEPIDAQFDIIQNI 650


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 91   RPSRITERSSWSIRKSSHDSKKVVTN*KI*PNNMTRVK 204
            +P  +  RS+ +   +  D+  VVT  K   +N+T  K
Sbjct: 983  KPPSVVSRSTQTSANNDKDTNAVVTQSKEARDNITATK 1020


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 313 NNVARAISSFYNKF 272
           NNV + ++ FYN F
Sbjct: 521 NNVPKKLNMFYNNF 534


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 313 NNVARAISSFYNKF 272
           NNV + ++ FYN F
Sbjct: 521 NNVPKKLNMFYNNF 534


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 308 VVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHED 448
           +V C   +DK  +K   +V    T   I R L +E   ++ +  H+D
Sbjct: 431 IVKCTDFVDKAMVKQYVKVKHSATLGYISRVLEKEPYVIILDDEHDD 477


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 470 RNRSRHQDPHDSCCK 426
           RN  R  DPHD   K
Sbjct: 178 RNERRTPDPHDETAK 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,707
Number of Sequences: 438
Number of extensions: 4455
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)