Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1656
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 45 7e-05
07_01_1036 + 9021395-9021658,9024214-9024690 44 1e-04
08_02_1304 - 26008105-26009070 36 0.042
08_02_1310 - 26037025-26038074 35 0.074
07_01_0011 - 81696-81892,83345-83621,83841-84189,84280-84644 35 0.074
08_02_1251 - 25592537-25593380,25593589-25593893 34 0.098
06_01_1008 - 7853089-7854147 34 0.098
08_01_0027 - 195321-195932,197206-197415 33 0.23
08_01_0803 - 7771507-7772184,7772238-7772325,7772440-7772546 32 0.40
10_08_0082 + 14713989-14714046,14714109-14714953 31 0.91
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 31 0.91
08_01_0797 + 7711772-7712869 31 1.2
08_01_0801 - 7750548-7751708 30 2.1
07_03_0351 + 17082571-17083087,17083135-17083148 29 3.7
10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886 29 4.9
07_01_0973 - 8193002-8193261,8193388-8193485,8194117-8194401,819... 29 4.9
10_08_0129 - 15025076-15025858,15025951-15026283 28 6.4
10_08_0122 - 14982676-14983043,14983957-14985145 28 6.4
09_01_0011 + 291315-292277 28 6.4
04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072 28 6.4
10_08_0119 - 14952786-14953931,14954709-14954831 28 8.5
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 44.8 bits (101), Expect = 7e-05
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +3
Query: 267 AHKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEEL 434
AHKL+LS+ S F +MF M + VF +DV A L+QFMY GE+ V EE+
Sbjct: 365 AHKLILSLWSMTFDKMFTNGMKESSASNVFFEDVPVEAFFLLIQFMYSGELKVDIEEI 422
>07_01_1036 + 9021395-9021658,9024214-9024690
Length = 246
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +3
Query: 267 AHKLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELAS 440
AH+++L+ SP F+ M + M ++ I+ + DVS+ LR + +MY E + ++ +
Sbjct: 83 AHRVILASRSPVFRAMLENEMEESRSGIIKIYDVSYDVLRAFVHYMYTAEALLDEQMASD 142
Query: 441 FISTAEQLQVKGL 479
+ AE+ +VK L
Sbjct: 143 LLVLAEKYEVKNL 155
>08_02_1304 - 26008105-26009070
Length = 321
Score = 35.5 bits (78), Expect = 0.042
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 267 AHKLVLSVCSPYFQE--MFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELAS 440
AH+ VL+ SP F+ + M P V L+D+ + R LL F+Y +V Q E +S
Sbjct: 167 AHRAVLAARSPVFRAELLGSMAEATMPCVTLRDIEPATFRALLHFVY---TDVLQIEGSS 223
Query: 441 FISTAEQLQ 467
ST + LQ
Sbjct: 224 STSTTDLLQ 232
>08_02_1310 - 26037025-26038074
Length = 349
Score = 34.7 bits (76), Expect = 0.074
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 264 QAHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELA 437
+AH+ VL+ SP F+ M P V L+D+ +A R +L F+Y + +ELA
Sbjct: 191 RAHRAVLAARSPVFKAALFGSMAEATAPSVALRDMDPAAFRAVLHFIYTDALPDDIDELA 250
Query: 438 SF 443
F
Sbjct: 251 GF 252
>07_01_0011 - 81696-81892,83345-83621,83841-84189,84280-84644
Length = 395
Score = 34.7 bits (76), Expect = 0.074
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +3
Query: 261 LQAHKLVLSVCSPYFQEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEE 431
+QAHK +L+ SP F+ F NP H ++ ++DV + ++ F+Y E+ E
Sbjct: 197 VQAHKWILAARSPVFKAQFFGPIGNPDLHTVI-VEDVEPLVFKAMVNFIYSDEL-PSIHE 254
Query: 432 LASFIST 452
LA +ST
Sbjct: 255 LAGSVST 261
>08_02_1251 - 25592537-25593380,25593589-25593893
Length = 382
Score = 34.3 bits (75), Expect = 0.098
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 267 AHKLVLSVCSPYFQEMFKMNPTQHPI--VFLKDVSHSALRDLLQFMYQGE 410
AH+ +L+VCSP F+ + + + + L D+ + LL FMY G+
Sbjct: 237 AHRALLAVCSPVFKALLLSSTAEAAACSITLNDIKPAMFEALLHFMYTGD 286
>06_01_1008 - 7853089-7854147
Length = 352
Score = 34.3 bits (75), Expect = 0.098
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 267 AHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQG 407
AHK++L+ SP F F M + V +KD+ S + +L F+Y G
Sbjct: 190 AHKIILAARSPVFMAEFFGPMKESSSQCVEIKDIEASVFKAMLHFIYTG 238
>08_01_0027 - 195321-195932,197206-197415
Length = 273
Score = 33.1 bits (72), Expect = 0.23
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 261 LQAHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQ 425
L+AHK +L+ CSP F+ MF + + + + D+ + L+ F+Y G + + Q
Sbjct: 119 LKAHKAILASCSPVFESMFLHDLKEKESSTININDMCLESCSALIGFIY-GTIKLDQ 174
>08_01_0803 - 7771507-7772184,7772238-7772325,7772440-7772546
Length = 290
Score = 32.3 bits (70), Expect = 0.40
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +3
Query: 267 AHKLVLSVCSPYFQ-EMF-KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNV 419
AHK+VL++ SP F+ E+F M ++ +KD+ + LL F+Y +++
Sbjct: 132 AHKVVLAMRSPVFKAELFGPMREAGAQVLPIKDIQPDVFKALLHFIYTDSLSI 184
>10_08_0082 + 14713989-14714046,14714109-14714953
Length = 300
Score = 31.1 bits (67), Expect = 0.91
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +3
Query: 261 LQAHKLVLSVCSPYFQE----MFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQE 428
L AH+ VL+ SP F+ + K T V ++D+ + LL+FMY + +E
Sbjct: 141 LAAHRCVLAARSPVFKAELYGLMKEGGTAAGAVHIEDIEPRVFKVLLRFMYTDSLPEMEE 200
Query: 429 E 431
E
Sbjct: 201 E 201
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 267 AHKLVLSVCSPYFQ-EMF-KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEV 413
AHK+VL+ SP F+ ++F M + ++D+ S + LL FMY E+
Sbjct: 324 AHKVVLAARSPVFRAQLFGPMKDKNMKRITIEDMEASVFKALLHFMYWDEL 374
>08_01_0797 + 7711772-7712869
Length = 365
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 267 AHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMY 401
AHKLVL+ SP F+ F +M + +KD+ S R LL F+Y
Sbjct: 205 AHKLVLAARSPVFKAEFYGEMIERGTFSIDIKDMQPSVFRALLHFIY 251
>08_01_0801 - 7750548-7751708
Length = 386
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +3
Query: 270 HKLVLSVCSPYFQ-EMFKM--NPTQHPIVFLKDVSHSALRDLLQFMYQGEVNV 419
HKLVL++ SP F+ E+ + P PI + D+ + R LLQF+Y + V
Sbjct: 215 HKLVLAMRSPVFKAELCGLLREPGTQPITIV-DMQPAVFRALLQFIYTDQFPV 266
>07_03_0351 + 17082571-17083087,17083135-17083148
Length = 176
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 291 ILIELIYVLAIXPSAANVTSTRSPRDSRP*KPADIFAWKLFQHSENCSS 145
+L+ L+++LA + A T P + +P + D+F +LF + N S+
Sbjct: 9 LLLLLLFLLAAATATATATGNALPPEPKPARWPDVFHARLFTNLTNHSA 57
>10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886
Length = 334
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 267 AHKLVLSVCSPYFQ-EMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEE 431
AH+ VL+ SP F E+F + + +V + D+ + LL+FMY + +EE
Sbjct: 174 AHRCVLAAQSPVFSAELFGPMKDSDRAGVVRIDDMEAQVFKALLRFMYTDSLPEMEEE 231
>07_01_0973 -
8193002-8193261,8193388-8193485,8194117-8194401,
8195559-8195773,8196549-8197058
Length = 455
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +2
Query: 509 PSKPKPTSRPGPRSSQQRQSVMTKLETDLDSKPSSTPVA----VKRP 637
PS P P P + +++ V +++ + SKPS +P+ VKRP
Sbjct: 85 PSPSPPPPPPAPAEAARQKEVERRVDAVVQSKPSVSPLPSSADVKRP 131
>10_08_0129 - 15025076-15025858,15025951-15026283
Length = 371
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +3
Query: 267 AHKLVLSVCSPYF-QEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYQGE-VNVKQEE 431
AH+LVL+V SP F E F K + ++ + D+ + LL F+Y + + QEE
Sbjct: 180 AHRLVLAVRSPVFVAEHFGPMKEGVNVNDVIEINDMDAQVFKALLNFIYTDTLLEMDQEE 239
Query: 432 LAS 440
A+
Sbjct: 240 DAT 242
>10_08_0122 - 14982676-14983043,14983957-14985145
Length = 518
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +3
Query: 267 AHKLVLSVCSPYF-QEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYQGE-VNVKQEE 431
AH+LVL+V SP F E F K + ++ + D+ + LL F+Y + + QEE
Sbjct: 208 AHRLVLAVRSPVFVAEHFGPMKEGVNVNDVIEINDMDAQVFKALLNFIYTDTLLEMDQEE 267
Query: 432 LAS 440
A+
Sbjct: 268 DAT 270
>09_01_0011 + 291315-292277
Length = 320
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 512 SKPKPTSRPGPRSSQQRQSVMTKL-ETDLDSKPSSTPVAV-KRPNR 643
S+P+P +RP P S + V+ L + + KP+ P KR N+
Sbjct: 64 SQPQPKTRPSPASKASKAKVLLLLGDGEPKKKPAPNPTPTQKRSNK 109
>04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072
Length = 414
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 291 CSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVN-VKQEEL 434
C P + F T++P+VFL+ + + DLLQ + V+ K+ EL
Sbjct: 253 CEPRKEIFFTERNTENPLVFLRFLVSTPWGDLLQIKFSRRVHRTKRLEL 301
>10_08_0119 - 14952786-14953931,14954709-14954831
Length = 422
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 267 AHKLVLSVCSPYFQ-EMFK-MNPTQHPIVFLKDVSHSALRDLLQFMY 401
AH+LVL+ SP F+ E+FK M ++ + ++ + LL F+Y
Sbjct: 262 AHRLVLAARSPVFKAELFKPMEEGTTDVIKIDNMDAQVFKALLVFIY 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,242,498
Number of Sequences: 37544
Number of extensions: 315089
Number of successful extensions: 954
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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