Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1654
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...   135   6e-33
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.77 
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    28   1.0  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    28   1.4  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    28   1.4  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.4  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           26   5.5  

>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score =  135 bits (326), Expect = 6e-33
 Identities = 65/85 (76%), Positives = 72/85 (84%)
 Frame = +1

Query: 256 LVGAPACGDVMKLQIXVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKN 435
           LVGAPACGDVM+L I V+++G I D KFKTFGCGSAIASSS  T  VKG T++EA K+KN
Sbjct: 82  LVGAPACGDVMRLAIRVNKDGVIEDVKFKTFGCGSAIASSSYVTTMVKGMTLEEASKIKN 141

Query: 436 TDIAKELSLPPVKLHCSMLAEDAIK 510
           T IAKEL LPPVKLHCSMLAEDAIK
Sbjct: 142 TQIAKELCLPPVKLHCSMLAEDAIK 166



 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +2

Query: 173 YHANVIDHYENPRNVGSLDKKDKNVG 250
           YH NV+DHY NPRNVG+L K D +VG
Sbjct: 54  YHKNVLDHYNNPRNVGTLPKGDPDVG 79


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 452 SLAISVFFN-FSASSTVFPLTHSVARELEAIAEPHPKVLNLAS 327
           +L +S F +   A+  V P+ H V   L   A+PHP++  LAS
Sbjct: 763 TLVVSSFISHIVAAMVVLPIVHEVGSRL---ADPHPRLFVLAS 802


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -2

Query: 312 LVHXDLQLHYVSTCRCTNEAVPTFLSFLSNEPTLRGFS 199
           L H    L Y  TCRC  + V     FL N+     FS
Sbjct: 52  LTHYQWYLIYKHTCRCFQQVVRIVYWFLGNQVIRENFS 89


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 440 SVFFNFSASSTVFPLTHSVARELEAIAEPHPKVLNLASTIFPFSSTXI 297
           SVF     ++ +F L+ S   +L    EPH ++++  S  FP+ S  I
Sbjct: 245 SVFVLADGTACIFTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTI 292


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 280 DVMKLQIXVDENGKIVDAKF 339
           DVMK+ I V  NG+IVD+ F
Sbjct: 194 DVMKVDIGVHVNGRIVDSAF 213


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 319 KIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKL 429
           K V  +F T G  S I ++ ++    KGK +DEAL+L
Sbjct: 597 KRVLGEFLTKGSNSHILNAFISAFDFKGKRIDEALRL 633


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -1

Query: 196 MVNDVC--MIRCRKNHIRTSKAFKTH 125
           +   VC  +++C K H+  S+ F+TH
Sbjct: 58  LTKQVCVELMQCNKKHLEASRYFQTH 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,802
Number of Sequences: 5004
Number of extensions: 52762
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)