Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1654
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0152 - 27041070-27041217,27041939-27041993,27043321-27043633    149   2e-36
05_07_0155 + 28069592-28069925,28071072-28071126,28072448-28072577    144   4e-35
03_05_0679 + 26678131-26679204                                         31   0.61 
01_06_1140 - 34836967-34836996,34837107-34838771                       31   1.1  
08_02_1135 - 24590664-24591231,24591314-24591393,24591523-24591579     29   2.4  
09_04_0650 - 19214589-19215106,19215839-19215935,19216100-192161...    27   9.9  

>01_06_0152 - 27041070-27041217,27041939-27041993,27043321-27043633
          Length = 171

 Score =  149 bits (361), Expect = 2e-36
 Identities = 72/86 (83%), Positives = 79/86 (91%), Gaps = 1/86 (1%)
 Frame = +1

Query: 256 LVGAPACGDVMKLQIXVDEN-GKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLK 432
           LVGAPACGDVMKLQI VDE+ GKIVDA FKTFGCGSAIASSS+ATEWVKGK ++E + +K
Sbjct: 62  LVGAPACGDVMKLQIRVDESSGKIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVVTIK 121

Query: 433 NTDIAKELSLPPVKLHCSMLAEDAIK 510
           NT+IAK LSLPPVKLHCSMLAEDAIK
Sbjct: 122 NTEIAKHLSLPPVKLHCSMLAEDAIK 147



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +2

Query: 101 LINGIRRCMCLKGFGSPNVILAAP-YHANVIDHYENPRNVGSLDKKDKNVGT 253
           L  G+RR +   G  +P  +  A  YH  V+DHYENPRNVGS +  D +VGT
Sbjct: 10  LAPGLRRVLG-GGAAAPVAVGGAKAYHERVVDHYENPRNVGSFENDDPSVGT 60


>05_07_0155 + 28069592-28069925,28071072-28071126,28072448-28072577
          Length = 172

 Score =  144 bits (350), Expect = 4e-35
 Identities = 69/86 (80%), Positives = 79/86 (91%), Gaps = 1/86 (1%)
 Frame = +1

Query: 256 LVGAPACGDVMKLQIXVDE-NGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLK 432
           LVGAPACGDVMKLQI VDE +G+IVDA FKTFGCGSAIASSS+A+EWVKGK +++A  +K
Sbjct: 69  LVGAPACGDVMKLQIRVDEESGRIVDACFKTFGCGSAIASSSVASEWVKGKQMEDAASIK 128

Query: 433 NTDIAKELSLPPVKLHCSMLAEDAIK 510
           N++IAK LSLPPVKLHCSMLAEDAIK
Sbjct: 129 NSEIAKHLSLPPVKLHCSMLAEDAIK 154



 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 19/33 (57%), Positives = 24/33 (72%)
 Frame = +2

Query: 155 VILAAPYHANVIDHYENPRNVGSLDKKDKNVGT 253
           V+    YH  V+DHY+NPRNVG+ DK D +VGT
Sbjct: 35  VVRRRGYHERVVDHYDNPRNVGTFDKDDPDVGT 67


>03_05_0679 + 26678131-26679204
          Length = 357

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = -3

Query: 461 KDSSLAISVFFNFSASSTVFPLTHSVAREL-EAIAEPHPKVLNLASTIFPFSSTXICNFI 285
           + +S   SV F+F ASS+  P   +  REL + +    P   +LA  ++PF  + +   I
Sbjct: 86  RHASCPESVHFHFLASSSSSPEAAAAVRELRDTVRASFP---SLAFRVYPFDESRVAGLI 142

Query: 284 TSPHAGAPTRLYLHFYLSY 228
           ++   GA  R  L++  SY
Sbjct: 143 STSIRGALDR-PLNYARSY 160


>01_06_1140 - 34836967-34836996,34837107-34838771
          Length = 564

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 268 PACGDVMKLQIXVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKL 429
           PAC     LQ+  + +G IV +     G   + A ++L   + K   +DEA ++
Sbjct: 314 PACAQTAALQVGREVHGYIVTSGLACHGALDSFACNALVDMYAKSGALDEARRI 367


>08_02_1135 - 24590664-24591231,24591314-24591393,24591523-24591579
          Length = 234

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 464 GKDSSLAISVFFNFSASSTVFPLTHSVARELEAIAEPHPK 345
           G ++ L       +   +TV+P  H   REL  I + HPK
Sbjct: 7   GSNTLLKSDSILEYVLDTTVYPREHERLRELRLITQNHPK 46


>09_04_0650 -
           19214589-19215106,19215839-19215935,19216100-19216189,
           19216323-19216436,19217126-19217201,19217329-19217618
          Length = 394

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +3

Query: 54  RLSSEFVFLKY--IKWLF*STEFVDVCVLKALEVLM*FLRHLIMQTSLTITRI 206
           RL SEF+ L+Y  I +L   + FVD+C   A+  L+  +R L+ Q  L +  +
Sbjct: 118 RLLSEFLNLRYSQISFLLARSFFVDLCT--AILALLARVRALVQQMLLDVVSV 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,740,709
Number of Sequences: 37544
Number of extensions: 301349
Number of successful extensions: 666
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)