Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1654
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23834| Best HMM Match : No HMM Matches (HMM E-Value=.)             102   2e-22
SB_14262| Best HMM Match : DUF999 (HMM E-Value=1.1)                    30   1.9  
SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_38598| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-07)                 28   7.6  
SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17)                    28   7.6  

>SB_23834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score =  102 bits (245), Expect = 2e-22
 Identities = 47/51 (92%), Positives = 49/51 (96%)
 Frame = +1

Query: 256 LVGAPACGDVMKLQIXVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKT 408
           LVGAPACGDVMKLQI VDE GKI+DAKFKTFGCGSAIASSSLATEWVKGK+
Sbjct: 59  LVGAPACGDVMKLQIKVDEQGKIIDAKFKTFGCGSAIASSSLATEWVKGKS 109



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +2

Query: 164 AAPYHANVIDHYENPRNVGSLDKKDKNVGT 253
           A+ YH NVI+HYENP+NVGSLDK D  VGT
Sbjct: 28  ASNYHKNVIEHYENPKNVGSLDKDDATVGT 57


>SB_14262| Best HMM Match : DUF999 (HMM E-Value=1.1)
          Length = 505

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 68  ICFSEIYKMAFLINGIRRCMCLKGFGS 148
           I F  I  +AF++  IRRC C++  GS
Sbjct: 351 ILFDSIVMLAFIVVCIRRCWCMRAEGS 377


>SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 286 MKLQIXVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVD 414
           + L+  V EN   V+A  KT GC S  A       WV+    D
Sbjct: 524 LSLKFYVSENCPSVEAVVKTLGCTSLDAPDDAEALWVESVVGD 566


>SB_38598| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-07)
          Length = 336

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -2

Query: 591 LFHFVESLITITPYSLSVV*FCNLITLLNGVFCKHRAMKL 472
           L +   S+ T++PY+L +V     +++L  V+C  + M++
Sbjct: 164 LLNIAGSIDTLSPYNLYLVMIVVALSVLTSVYCSFKIMQI 203


>SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17)
          Length = 232

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 330 INDFSILVHXDLQLHYVSTCRCTNEAVPTFLS 235
           INDF+ L +  L LH++ +  C  + +P  LS
Sbjct: 38  INDFAFLNNRRLNLHHLMSLFCKTKKLPVALS 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,004,877
Number of Sequences: 59808
Number of extensions: 375114
Number of successful extensions: 936
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)