Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1654
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021492-2|CAA16379.1| 153|Caenorhabditis elegans Hypothetical ... 153 1e-37
Z68297-4|CAB54220.1| 356|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 28 5.0
U58734-6|AAB52505.3| 383|Caenorhabditis elegans Hypothetical pr... 28 5.0
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 28 5.0
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 28 5.0
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 28 5.0
U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop heli... 27 8.8
U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop heli... 27 8.8
U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop heli... 27 8.8
M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD, alterna... 27 8.8
M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein. 27 8.8
>AL021492-2|CAA16379.1| 153|Caenorhabditis elegans Hypothetical
protein Y45F10D.4 protein.
Length = 153
Score = 153 bits (371), Expect = 1e-37
Identities = 69/85 (81%), Positives = 79/85 (92%)
Frame = +1
Query: 256 LVGAPACGDVMKLQIXVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKN 435
+VGAPACGDVMKLQI VD+NGKI++AKFKTFGCGSAIASSSLATEW+ GKT+D A K+KN
Sbjct: 55 IVGAPACGDVMKLQIRVDDNGKIIEAKFKTFGCGSAIASSSLATEWINGKTIDYASKIKN 114
Query: 436 TDIAKELSLPPVKLHCSMLAEDAIK 510
+IAKEL LPPVKLHCSMLA+DAI+
Sbjct: 115 DEIAKELCLPPVKLHCSMLAQDAIQ 139
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/41 (63%), Positives = 27/41 (65%)
Frame = +2
Query: 131 LKGFGSPNVILAAPYHANVIDHYENPRNVGSLDKKDKNVGT 253
L F P A YH VIDHYENPRNVGSLDK D +VGT
Sbjct: 13 LHKFALPAATSVAQYHEKVIDHYENPRNVGSLDKNDPSVGT 53
>Z68297-4|CAB54220.1| 356|Caenorhabditis elegans Hypothetical
protein F11A10.6 protein.
Length = 356
Score = 30.7 bits (66), Expect = 0.94
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -2
Query: 621 LLRIHNFITDLFHFVESLITITPYSLSVV*FCNLITLLNGVFCKHRAMKLDW 466
+LRI +I HF L+ + PY ++ + L + FC H + + W
Sbjct: 33 VLRIIGYIISYLHFARLLLWLHPYQIASI---ELWRIATSTFCGHNVLDVLW 81
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -3
Query: 314 FSSTXICNFITSPHAGAPTRLYLHFYLSYPMNQHC 210
FS+ CN++ P+ G P Y H S+ C
Sbjct: 196 FSTPISCNYLNQPNGGCPEDHYCHTGASFSTTACC 230
>U58734-6|AAB52505.3| 383|Caenorhabditis elegans Hypothetical
protein T27A10.7 protein.
Length = 383
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 443 LLKSCPYHQSSFIALCLQKTPLS-SVIRLQNQTTDSE*GVIVIND 574
L+K+ P S LC+ +T +S +IR Q T+ + GVI+I D
Sbjct: 126 LVKAGP--TSQLFQLCISETEMSFKIIRQTEQETERKMGVIIIMD 168
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 418 ALKLKNTDIAKELSLPPVKLHCSMLAEDAIKQR 516
A+++ + D+A L+ PVK+HC+ L +K +
Sbjct: 294 AVRMGHRDLASALAQGPVKMHCNDLHRATLKDQ 326
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 418 ALKLKNTDIAKELSLPPVKLHCSMLAEDAIKQR 516
A+++ + D+A L+ PVK+HC+ L +K +
Sbjct: 294 AVRMGHRDLASALAQGPVKMHCNDLHRATLKDQ 326
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 418 ALKLKNTDIAKELSLPPVKLHCSMLAEDAIKQR 516
A+++ + D+A L+ PVK+HC+ L +K +
Sbjct: 294 AVRMGHRDLASALAQGPVKMHCNDLHRATLKDQ 326
>U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop helix
protein 1, isoformc protein.
Length = 319
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -3
Query: 440 SVFFNFSASSTVFPLTHSVARELEAIAEPHPKVLNLASTIFPFSSTXICNFITSPHAGAP 261
S+++N S T +T L + A P P+VL+ A+T + ++ S AP
Sbjct: 18 SIYYNSSPRVTANDIT-----TLTSFAAPAPQVLDYANTQYDIYRNQPAYYLPSYAPTAP 72
Query: 260 TRLYLHF 240
T Y F
Sbjct: 73 TTFYSDF 79
>U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop helix
protein 1, isoforma protein.
Length = 320
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -3
Query: 440 SVFFNFSASSTVFPLTHSVARELEAIAEPHPKVLNLASTIFPFSSTXICNFITSPHAGAP 261
S+++N S T +T L + A P P+VL+ A+T + ++ S AP
Sbjct: 18 SIYYNSSPRVTANDIT-----TLTSFAAPAPQVLDYANTQYDIYRNQPAYYLPSYAPTAP 72
Query: 260 TRLYLHF 240
T Y F
Sbjct: 73 TTFYSDF 79
>U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop helix
protein 1, isoformb protein.
Length = 324
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -3
Query: 440 SVFFNFSASSTVFPLTHSVARELEAIAEPHPKVLNLASTIFPFSSTXICNFITSPHAGAP 261
S+++N S T +T L + A P P+VL+ A+T + ++ S AP
Sbjct: 18 SIYYNSSPRVTANDIT-----TLTSFAAPAPQVLDYANTQYDIYRNQPAYYLPSYAPTAP 72
Query: 260 TRLYLHF 240
T Y F
Sbjct: 73 TTFYSDF 79
>M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD,
alternatively spliced productprotein.
Length = 320
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -3
Query: 440 SVFFNFSASSTVFPLTHSVARELEAIAEPHPKVLNLASTIFPFSSTXICNFITSPHAGAP 261
S+++N S T +T L + A P P+VL+ A+T + ++ S AP
Sbjct: 18 SIYYNSSPRVTANDIT-----TLTSFAAPAPQVLDYANTQYDIYRNQPAYYLPSYAPTAP 72
Query: 260 TRLYLHF 240
T Y F
Sbjct: 73 TTFYSDF 79
>M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein.
Length = 324
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -3
Query: 440 SVFFNFSASSTVFPLTHSVARELEAIAEPHPKVLNLASTIFPFSSTXICNFITSPHAGAP 261
S+++N S T +T L + A P P+VL+ A+T + ++ S AP
Sbjct: 18 SIYYNSSPRVTANDIT-----TLTSFAAPAPQVLDYANTQYDIYRNQPAYYLPSYAPTAP 72
Query: 260 TRLYLHF 240
T Y F
Sbjct: 73 TTFYSDF 79
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,425,744
Number of Sequences: 27780
Number of extensions: 291396
Number of successful extensions: 687
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -