Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1654
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22220.1 68417.m03214 iron-sulfur cluster assembly complex pr...   149   1e-36
At4g04080.1 68417.m00577 iron-sulfur cluster assembly complex pr...   147   6e-36
At3g01020.1 68416.m00003 iron-sulfur cluster assembly complex pr...   146   1e-35
At2g14920.1 68415.m01697 sulfotransferase family protein similar...    30   1.5  
At5g66630.1 68418.m08398 LIM domain-containing protein contains ...    29   3.6  
At3g50100.1 68416.m05477 exonuclease family protein contains exo...    28   4.7  
At3g61590.1 68416.m06898 F-box family protein contains weak hit ...    27   8.2  

>At4g22220.1 68417.m03214 iron-sulfur cluster assembly complex
           protein, putative similar to iron-sulfur cluster
           assembly complex ISCU1 (GI:11545705) [Homo sapiens];
           nifU protein homolog YPL135w (GI:15619823)
           [Saccharomyces cerevisiae] PIR2:S69049
          Length = 167

 Score =  149 bits (362), Expect = 1e-36
 Identities = 71/86 (82%), Positives = 79/86 (91%), Gaps = 1/86 (1%)
 Frame = +1

Query: 256 LVGAPACGDVMKLQIXVDEN-GKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLK 432
           LVGAPACGDVMKLQI VDE  G+IVDA+FKTFGCGSAIASSS+ATEWVKGK +++ L +K
Sbjct: 57  LVGAPACGDVMKLQIKVDEKTGQIVDARFKTFGCGSAIASSSVATEWVKGKAMEDVLTIK 116

Query: 433 NTDIAKELSLPPVKLHCSMLAEDAIK 510
           NT+IAK LSLPPVKLHCSMLAEDAIK
Sbjct: 117 NTEIAKHLSLPPVKLHCSMLAEDAIK 142



 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 22/27 (81%), Positives = 23/27 (85%)
 Frame = +2

Query: 173 YHANVIDHYENPRNVGSLDKKDKNVGT 253
           YH NVIDHY+NPRNVGS DK D NVGT
Sbjct: 29  YHENVIDHYDNPRNVGSFDKNDPNVGT 55


>At4g04080.1 68417.m00577 iron-sulfur cluster assembly complex
           protein, putative similar to ISCU2 (GI:11545707) [Homo
           sapiens]
          Length = 171

 Score =  147 bits (356), Expect = 6e-36
 Identities = 67/85 (78%), Positives = 77/85 (90%)
 Frame = +1

Query: 256 LVGAPACGDVMKLQIXVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKN 435
           LVGAP CGDVMKLQ+  D +G+I+DAKFKTFGCGSAIA+SS+ATEWVKGK+V+E L +KN
Sbjct: 56  LVGAPQCGDVMKLQVKFDGSGQIIDAKFKTFGCGSAIAASSVATEWVKGKSVEEVLTIKN 115

Query: 436 TDIAKELSLPPVKLHCSMLAEDAIK 510
           + IAK LSLPPVKLHCSMLAEDAIK
Sbjct: 116 SQIAKHLSLPPVKLHCSMLAEDAIK 140



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 23/36 (63%), Positives = 28/36 (77%)
 Frame = +2

Query: 146 SPNVILAAPYHANVIDHYENPRNVGSLDKKDKNVGT 253
           +P  +++  YH NVIDHY+NPRNVGS DK D NVGT
Sbjct: 19  TPFPVVSRLYHPNVIDHYDNPRNVGSFDKNDPNVGT 54


>At3g01020.1 68416.m00003 iron-sulfur cluster assembly complex
           protein, putative similar to ISCU2 (GI:11545707) [Homo
           sapiens]; similar to NIFU-like protein (GI:15919270)
           [Cowdria ruminantium]
          Length = 163

 Score =  146 bits (353), Expect = 1e-35
 Identities = 64/85 (75%), Positives = 77/85 (90%)
 Frame = +1

Query: 256 LVGAPACGDVMKLQIXVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKN 435
           LVGAPACGD+M LQI VD++G+I+D +FKTFGCGSAIASSS+A+EW+KGKT+DE + +KN
Sbjct: 55  LVGAPACGDLMSLQIKVDDSGQIIDTRFKTFGCGSAIASSSVASEWIKGKTLDEVMTIKN 114

Query: 436 TDIAKELSLPPVKLHCSMLAEDAIK 510
            +IAK L LPPVKLHCSMLAEDAIK
Sbjct: 115 AEIAKHLRLPPVKLHCSMLAEDAIK 139



 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = +2

Query: 173 YHANVIDHYENPRNVGSLDKKDKNVGT 253
           YH NVIDH+ENPRNVGS ++ D NVGT
Sbjct: 27  YHENVIDHFENPRNVGSFNRNDPNVGT 53


>At2g14920.1 68415.m01697 sulfotransferase family protein similar to
           steroid sulfotransferase from [Brassica napus]
           GI:3420008, GI:3420004; contains Pfam profile PF00685:
           Sulfotransferase domain
          Length = 333

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/54 (37%), Positives = 31/54 (57%)
 Frame = -1

Query: 169 CRKNHIRTSKAFKTHTSTNSVD*KSHFIYFRKTNSDDKRSYILDDVVIDYTLII 8
           C  +++R+ +  KT TS+  VD KS   YFRK    D +SY+  ++V    +II
Sbjct: 273 CSLSNLRSVEINKTRTSSR-VDFKS---YFRKGQVGDWKSYMTPEMVDKIDMII 322


>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
           similarity to Pfam profile PF00412: LIM domain
          Length = 702

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = +1

Query: 262 GAPACGDVMKLQIXVDENGKIVDAKFKTFGCG-SAIASSSLATEWVKGKTVDEALKLKNT 438
           G P C    +L+    + GK+ D ++    CG SA+ S      +   +   E+L +K  
Sbjct: 435 GTPKCCSCERLEPRGTKYGKLSDGRWLCLECGKSAMDSDECQPLYFDMRDFFESLNMK-- 492

Query: 439 DIAKELSLPPVKLHCSMLAEDAIKQRYQI 525
            I KE  L  V+       E+ I   Y++
Sbjct: 493 -IEKEFPLILVRKELLNKKEEKIDNHYEV 520


>At3g50100.1 68416.m05477 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 406

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = -3

Query: 425 FSASSTVFPLTHSVARELEAIAEPHPKVLNLASTIFPFSST 303
           F ++ T+  + HS+ R+LE +   HPKV++ A  +F + +T
Sbjct: 213 FLSTGTIL-VGHSLNRDLEVLKIDHPKVIDTA-LVFKYPNT 251


>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
           Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
           Pisum sativum, EMBL:AF004843
          Length = 411

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 166 RKNHIRTSKAFKTHTSTNSVD*KSHFIYFRKTNSDDKRSYILDDVV 29
           R N I +S+ F  + S NSV  +    YF  T +DD   Y  D ++
Sbjct: 69  RWNEIVSSRRFLCNFSNNSVSQRPW--YFMFTTTDDPSGYAYDPII 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,287,692
Number of Sequences: 28952
Number of extensions: 259651
Number of successful extensions: 666
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)