Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1653
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    37   0.002
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    29   0.78 
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   5.5  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   5.5  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   7.3  
SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.7  
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p...    25   9.7  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   9.7  

>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 335 GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDR 442
           G++ YNF   +P   P S E + G+VRY ++ T++R
Sbjct: 273 GEYTYNFDLAIPNCFPESVEAKMGWVRYFLEATVER 308


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 335 GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDRPWKF 454
           G+++YNF   +    P S + + G V Y ++  +DR   F
Sbjct: 191 GEYVYNFELPISCTYPESIQTDMGRVYYFLETLVDRSSTF 230


>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 90

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -2

Query: 311 LYYFPVNSKKSGNILHFLYHSIS*FCFALSIFLLF--AXIQFGMSFTLNFNMYASNF 147
           L Y  ++S+     + +L+ S    CF +S+FL F    I +G++++ N N  +  F
Sbjct: 33  LIYLVIHSQNELVSMSWLFRST--ICFGVSLFLSFFLVRILWGIAYSYNSNSMSIYF 87


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 135 QKHIRSFHSLFVLHNMYSIDYPNRY 61
           +KH+++ HSL++    Y +D P+ +
Sbjct: 224 KKHMKASHSLYIPEREYLVDEPSLF 248


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 495 WI*VSSILQGTNPHSISKDVLLFLLRITTFSSGCAG 602
           WI   S+L GT+ + I ++    L+R   F S   G
Sbjct: 302 WILSKSLLSGTDAYQIEREQAFRLIRTLYFLSSTEG 337


>SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 87

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 260 LYHSIS*FCFALSIFLLFAXI 198
           L H I+ F F++S+FL+F  I
Sbjct: 61  LIHGINIFSFSISLFLIFLTI 81


>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 71  G*SMEYILCRTNSEWKDRI 127
           G S++YI C  N  WK++I
Sbjct: 115 GISLKYIPCAINCHWKNKI 133


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 446 WKFDQETKMAFTVINALDLSLIHLTRNQSTFN 541
           WK     K   TV N  D+ L+H+ R +  F+
Sbjct: 11  WKKYFSNKKKPTVKNTSDIDLLHINRGRQPFD 42


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 503 SNPMHLLL*MPSWFPDQISMVCLML 429
           SN +   L +P+W+P + ++VCL+L
Sbjct: 71  SNLVIYALRVPNWWPCKTTVVCLIL 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,744
Number of Sequences: 5004
Number of extensions: 65546
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)