Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1653
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0129 + 7055896-7056135,7056404-7056771,7056816-7056928,705...    35   0.066
01_01_0898 + 7078900-7079079,7080269-7080301,7080480-7080653,708...    30   1.4  
02_04_0174 - 20607745-20608998                                         28   5.7  
12_01_0384 + 3012359-3012404,3012641-3012825,3013014-3013045,301...    28   7.6  
07_03_0393 - 17630097-17630367,17630483-17630709                       28   7.6  
05_05_0357 + 24377989-24378039,24378601-24378632,24378724-243788...    28   7.6  
01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694,866...    28   7.6  

>02_02_0129 +
           7055896-7056135,7056404-7056771,7056816-7056928,
           7057014-7057118,7057283-7057860,7057889-7058346,
           7058430-7058681,7058762-7058872,7058960-7059020,
           7059122-7059214,7059292-7059477
          Length = 854

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 27/74 (36%), Positives = 39/74 (52%)
 Frame = +3

Query: 57  ANIYLDNQWNTYYAGQTVNGRIEYVFDSPKKVRGIHVKIKGEAHTELYXSKQEENAQGKT 236
           ANI   NQWN +    T+    E +  S +K+RGI  + KG A  +     +EE A G  
Sbjct: 178 ANI-TPNQWNDFL---TLKNWPEEIKRS-QKLRGI--RTKGGAVNKRGGGNEEEGATGTN 230

Query: 237 ESTDTMIQEMKNIS 278
              DT I+E++N+S
Sbjct: 231 GGVDTEIKELENLS 244


>01_01_0898 +
           7078900-7079079,7080269-7080301,7080480-7080653,
           7080866-7083890,7084253-7084596
          Length = 1251

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 534 HSISKDVLLFLLRITTFSSGCAGSCIWLLSR 626
           HS S+  L FLL + T + GC   CI+L+ R
Sbjct: 901 HSNSRHFLRFLLPVVTVAFGCMVICIFLMIR 931


>02_04_0174 - 20607745-20608998
          Length = 417

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 466 QDGIYSNKCIGFESHPSYKEPIHIQLAKTFCCFCCASPPL 585
           QD   +++ +G E  P+ K+P    L ++    C A PPL
Sbjct: 83  QDWCVAHRSLGVERIPTPKQPADPDLIRSLLAQCPALPPL 122


>12_01_0384 +
           3012359-3012404,3012641-3012825,3013014-3013045,
           3013387-3013514,3013695-3013940,3014200-3014284,
           3014369-3014387,3014563-3014667
          Length = 281

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 463 NQDGIYSNKCIGFESHPSYKEPIHIQLAKTFCCFCCASP 579
           NQD  Y +  +G     S    +  QL K   C+CC +P
Sbjct: 205 NQDLPYDSASMGIILQRSEDNLVQGQLKKCITCYCCWNP 243


>07_03_0393 - 17630097-17630367,17630483-17630709
          Length = 165

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 571 ASPPLAVDVQAPVSGYCPGQVIPLKIDI 654
           + P L  D  +P+   C G+V+P+K+++
Sbjct: 105 SDPNLGADNASPLLSDCTGEVVPVKVEL 132


>05_05_0357 +
           24377989-24378039,24378601-24378632,24378724-24378818,
           24379165-24379237,24379804-24379867,24380465-24380732,
           24381132-24381202,24382028-24382084,24382302-24382403,
           24382544-24382588,24383616-24383693,24384350-24384400,
           24384475-24384556,24384883-24384956,24386093-24386144,
           24386230-24386288,24386380-24386456,24386692-24386778,
           24387011-24387101
          Length = 502

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 424 DSVSDITMFPFKR*RQDRWQCAGKIIYVFPLWY 326
           DSV+ I+ +PF R    R +CA  +I +F LW+
Sbjct: 149 DSVAQISFYPFIRNDIIRTKCANVLISMF-LWF 180


>01_01_1096 -
           8659091-8659459,8660730-8661050,8661416-8661694,
           8661781-8661897,8662142-8662210,8663204-8663397,
           8663552-8663633
          Length = 476

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 317 EIGIPQGKHIYNFTCT--LPPVLPSSFEGEHGYVRYTVKVTLDRP 445
           E+  P+  ++ N  C    P   P ++  ++GY RY V    D P
Sbjct: 335 ELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHP 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,819,877
Number of Sequences: 37544
Number of extensions: 387814
Number of successful extensions: 915
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)