Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1653
(660 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 8e-12
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30) 64 1e-10
SB_1624| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_46489| Best HMM Match : Lig_chan (HMM E-Value=0.072) 31 0.63
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0) 31 1.1
SB_17602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_14465| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_5819| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57) 28 5.9
>SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1295
Score = 67.7 bits (158), Expect = 8e-12
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Frame = +2
Query: 329 PQGKHIYNFTCTLPPV-LPSSFEGEHGYVRYTVKVTLDRPWKFDQETKMAFTVINALDLS 505
P G++ Y F+ +P LP+SFEG G+VRY +K +DRPW+FD TK AF++I +D++
Sbjct: 96 PPGEYSYPFSFIIPQQNLPTSFEGNFGHVRYWLKAIIDRPWRFDVTTKAAFSMIEFVDIN 155
Query: 506 LIHLTRN 526
+ L N
Sbjct: 156 TVMLMGN 162
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/78 (25%), Positives = 33/78 (42%)
Frame = +3
Query: 63 IYLDNQWNTYYAGQTVNGRIEYVFDSPKKVRGIHVKIKGEAHTELYXSKQEENAQGKTES 242
I L + +Y G+ +NG + + K RGI ++ GEA+ E + G
Sbjct: 9 ITLTGEKRVFYPGEVLNGSVYLKLNKELKTRGIRLEFHGEANVRW----SESSGSGNNRR 64
Query: 243 TDTMIQEMKNISRFLTIY 296
T T + I+ T+Y
Sbjct: 65 TRTYRNQEVYINTVATLY 82
>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = +2
Query: 335 GKHIYNFTCTLPPV-LPSSFEGEHGYVRYTVKVTLDRPWKFDQETKMAFTVINALDLS 505
G+H F+ +PP LPSSFE HG+VRY ++ + RPW+FD+ TK+ VI+ +D++
Sbjct: 126 GRHALEFSFKIPPFSLPSSFESTHGHVRYYLRARISRPWRFDEVTKLQVHVIDLIDVN 183
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 511 PSYKEPIHIQLAKTFCCFCCASP-PLAVDVQAPVSGYCPGQVIPLKIDIEN 660
P P+ + K C C + PL V S YCPG+ + L +I N
Sbjct: 185 PRLLMPVFGEAQKALNCLCNGTAAPLHALVYTDRSAYCPGERLTLTTEIRN 235
>SB_22838| Best HMM Match : Arrestin_N (HMM E-Value=1.1e-30)
Length = 173
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = +2
Query: 335 GKHIYNFTCTLPPV-LPSSFEGEHGYVRYTVKVTLDRPWKFDQETKMAFTVINALDLS 505
G+H F+ +PP LPSSFE HG+VRY ++ + RPW+FD+ TK+ VI+ +D++
Sbjct: 111 GRHALEFSFKIPPFSLPSSFESTHGHVRYYLRARISRPWRFDEVTKLQVHVIDLIDVN 168
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 63 IYLDNQWNTYYAGQTVNGRIEYVFDSPKKVRGIHVKIKGEAHT 191
I L+ + Y+ G+ V+G K R +HV+ GEA T
Sbjct: 9 IVLNRKNRIYHPGEVVSGECVVYSKESLKFRSVHVEFHGEART 51
>SB_1624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 45.6 bits (103), Expect = 4e-05
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Frame = +2
Query: 260 GNEEYFQISYYLLGSN--TGNEIGIPQGKHIYNFTCTLP--PVLPSSFEGEHGYVRYTVK 427
G +EY++ LL G + G++ Y F+ LP LP ++E +HGY++Y+++
Sbjct: 61 GKQEYYRHVAELLDKEKVAGMNGILKPGEYKYPFSFELPFDGDLPGTYEAKHGYIKYSLE 120
Query: 428 VTLDRPWKFDQETKMAFTVINALDLSLIHLTRNQSTFN 541
+DRP +T TVI+ +++ L Q N
Sbjct: 121 ALIDRPLMTPAKTGTLITVIDYVEIDKTLLEPRQKQEN 158
>SB_46489| Best HMM Match : Lig_chan (HMM E-Value=0.072)
Length = 327
Score = 31.5 bits (68), Expect = 0.63
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 564 LLRITTFSSGCAGSCIWLLSRSSNTFE 644
++ +T +G AG CIWLL R+SN +
Sbjct: 55 VIGLTLILTGIAGICIWLLDRNSNPID 81
>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 2682
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 324 EYHKGNTYIILPAHCHLSCLH-LLKGNMVMSDT 419
+YHK ++PA+ ++SC H L +G +V DT
Sbjct: 1920 DYHKAELARLVPAYAYISCKHSLQEGGIVEHDT 1952
>SB_17602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 287 YYLLGSNTGNEIGIPQGKHIYNFTCTLPPVLP 382
YY+L N G IG HI+ F C LP +LP
Sbjct: 275 YYILIYNIGKFIG---RSHIFFFACLLPSLLP 303
>SB_14465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 526 PIHIQLAKTFCCFCCASP-PLAVDVQAPVSGYCPGQVIPLKIDIEN 660
P+ + K C C + PL V S YCPG+ + L +I N
Sbjct: 2 PVFGEAQKALNCLCNGTAAPLHALVYTDRSAYCPGERLTLTTEIRN 47
>SB_5819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 493 IGFESHPSYKEPIHIQLAKTFCCFCCASPPLAVDVQAPVSGYCP 624
I ++P Y+ H Q + C + SPP AV+V+ Y P
Sbjct: 3 ISLPAYPPYRYVYHTQRTRRRCTYITPSPP-AVEVRISHPAYSP 45
>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
Length = 1121
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/62 (27%), Positives = 24/62 (38%)
Frame = +3
Query: 162 HVKIKGEAHTELYXSKQEENAQGKTESTDTMIQEMKNISRFLTIYWEVIQGMKLEYHKGN 341
HV ++ EL +QEE E + E + F +Y G+ LEY
Sbjct: 62 HVVSSIDSLEELQQQQQEEERARLVEEANQRAAEERQKKPFQNLYITCPDGLHLEYFNDG 121
Query: 342 TY 347
TY
Sbjct: 122 TY 123
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,952,395
Number of Sequences: 59808
Number of extensions: 457751
Number of successful extensions: 1104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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