Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1653
(660 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27970.1 68417.m04013 C4-dicarboxylate transporter/malic acid... 31 0.51
At5g18410.2 68418.m02167 expressed protein similar to p53 induci... 30 1.2
At5g18410.1 68418.m02166 expressed protein similar to p53 induci... 30 1.2
At5g16190.1 68418.m01892 glycosyl transferase family 2 protein s... 30 1.2
At2g41790.1 68415.m05165 peptidase M16 family protein / insulina... 28 4.8
At1g80540.1 68414.m09441 expressed protein ; expression supporte... 28 4.8
At5g13520.1 68418.m01561 peptidase M1 family protein similar to ... 28 6.3
At5g08030.1 68418.m00934 glycerophosphoryl diester phosphodieste... 28 6.3
At4g39180.1 68417.m05548 SEC14 cytosolic factor, putative / phos... 28 6.3
At1g03103.1 68414.m00286 protease inhibitor/seed storage/lipid t... 28 6.3
At3g42410.1 68416.m04385 replication protein-related weak simila... 27 8.4
>At4g27970.1 68417.m04013 C4-dicarboxylate transporter/malic acid
transport family protein contains Pfam profile PF03595:
C4-dicarboxylate transporter/malic acid transport
protein
Length = 519
Score = 31.5 bits (68), Expect = 0.51
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +3
Query: 207 KQEENAQGKTESTDTMIQEMKNISRFLTI--YWEVIQGMKLEYHKGNTYIILP 359
+Q N +GK T++ +Q+ K I+ LT Y++ +QG +LE K I+LP
Sbjct: 82 RQISNLRGKP--TESSLQDHKEITESLTADRYFDALQGPELETLKEKEKIVLP 132
>At5g18410.2 68418.m02167 expressed protein similar to p53 inducible
protein [Homo sapiens] GI:5616320
Length = 1017
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 237 ESTDTMIQEMKNISRFLTIYWEVIQGMKLEYHKGNTY 347
+ TDTM +E+ ++ FL+ W ++ + +E + N Y
Sbjct: 195 QDTDTMREELDDLQIFLSTRWAILLNLHVEMFRVNKY 231
>At5g18410.1 68418.m02166 expressed protein similar to p53 inducible
protein [Homo sapiens] GI:5616320
Length = 1234
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 237 ESTDTMIQEMKNISRFLTIYWEVIQGMKLEYHKGNTY 347
+ TDTM +E+ ++ FL+ W ++ + +E + N Y
Sbjct: 195 QDTDTMREELDDLQIFLSTRWAILLNLHVEMFRVNKY 231
>At5g16190.1 68418.m01892 glycosyl transferase family 2 protein
similar to cellulose synthase from Agrobacterium
tumeficiens [gi:710492] and Agrobacterium radiobacter
[gi:710493]; contains Pfam glycosyl transferase, group 2
family protein domain PF00535
Length = 504
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Frame = +2
Query: 326 IPQG-KHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDRP--------WKFDQETKMAF 478
+ QG +H Y TCT + + F+ E Y+ TV + P WKF K
Sbjct: 153 LKQGMRHSYVKTCTYIAIFDADFQPEPDYLERTVPFLIHNPELALVQARWKFVNAKKCLM 212
Query: 479 TVINALDLSLIHLTRNQST 535
T + + L+ H T Q +
Sbjct: 213 TRMQEMSLN-YHFTAEQES 230
>At2g41790.1 68415.m05165 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain; similar to insulin-degrading enzyme
(Insulysin, Insulinase, Insulin protease) [Mouse]
SWISS-PROT:Q9JHR7
Length = 970
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +3
Query: 120 IEYVFDSPKKVRGIHVKIKGEA-----HTELYXSKQEENAQGKTESTDTMIQEMKNISRF 284
++++ S K G H+ + E+ ++LY E+ T D +++ KN+
Sbjct: 810 VQFIIQSSVKGPG-HIDSRVESLLKNFESKLYEMSNEDFKSNVTALIDMKLEKHKNLKEE 868
Query: 285 LTIYWEVIQGMKLEYHK 335
YW IQ L++++
Sbjct: 869 SRFYWREIQSGTLKFNR 885
>At1g80540.1 68414.m09441 expressed protein ; expression supported
by MPSS
Length = 481
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 435 NVTLTVYLT*PCSPSKDEGRTGGNVQVKLYMC 340
NVT + Y+ PC+PS + RT N+ ++L +C
Sbjct: 88 NVTNSHYIAPPCNPSLNYLRTSNNL-IRLLIC 118
>At5g13520.1 68418.m01561 peptidase M1 family protein similar to
SP|P09960 Leukotriene A-4 hydrolase (EC 3.3.2.6) (LTA-4
hydrolase) {Homo sapiens}; contains Pfam profile
PF01433: Peptidase family M1
Length = 616
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 213 PVCXHTIRYELHP*F*HVCLELFLDYQKHIRSFHSLFVLHNMYS 82
P+ H+ HP HV L L+LD+ I +L L + +S
Sbjct: 3 PIDPHSFTDSSHPLTTHVALSLYLDFNTSIIHGSALLTLSSAFS 46
>At5g08030.1 68418.m00934 glycerophosphoryl diester
phosphodiesterase family protein similar to
glycerophosphodiester phosphodiesterase [Borrelia
hermsii] GI:1399038; contains Pfam profile PF03009:
Glycerophosphoryl diester phosphodiesterase family
Length = 372
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/78 (26%), Positives = 40/78 (51%)
Frame = +3
Query: 36 KDMGLKEANIYLDNQWNTYYAGQTVNGRIEYVFDSPKKVRGIHVKIKGEAHTELYXSKQE 215
K +G K+ + D Q+N + T + I D+P+ V GI+ +IK ++ ++Q
Sbjct: 135 KTLGAKQRYPFRDQQYNGKFPIITFDEYISIALDAPRVV-GIYPEIK----NPVFMNQQV 189
Query: 216 ENAQGKTESTDTMIQEMK 269
+ A GK + D ++ +K
Sbjct: 190 KWADGK-KFEDKFVETLK 206
>At4g39180.1 68417.m05548 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative
phosphatidylinositol-phosphatidylcholine transfer
protein SEC14, Yarrowia lipolytica, PIR2:S43745;
contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam
PF03765 : CRAL/TRIO, N-terminus
Length = 554
Score = 27.9 bits (59), Expect = 6.3
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Frame = +3
Query: 48 LKEANIYLDNQWNTYYAGQTVNGRIEYVFDSPKKVRGIHVKIKG-EAHTELYXSKQE--E 218
L EAN+Y Y G TV + EY+ KK+ + K K EA Y +++ +
Sbjct: 449 LTEANVYSREGSAVYQDGVTVMSKQEYI-AMVKKITDLEEKCKSMEAQAAFYMEREKTLD 507
Query: 219 NAQGKTESTDTMIQEM-KNISRFLTIYWEVIQGMKLEYHKGNTYII 353
A + + + + E K + +T E++ ++ + K +++
Sbjct: 508 AALRRIDQLELQLSETNKALDETMTRQHEIMAFIEKKKKKKRKFLL 553
>At1g03103.1 68414.m00286 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
profile PF00234:Protease inhibitor/seed storage/LTP
family; low similarity to SP:Q42978 Nonspecific
lipid-transfer protein 2 precursor (LTP 2) {Oryza
sativa}
Length = 171
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -1
Query: 456 SNFHGLS-NVTLTVYLT*PCS---PSKDEGRTGGNVQVKLYMCFPCGIPISFP 310
S+F+G N TL + L C+ PS TGGNV L P G P S P
Sbjct: 74 SSFYGFKFNRTLALNLPTACNVQTPSPSLCNTGGNVPTTLPANTPVGSPRSAP 126
>At3g42410.1 68416.m04385 replication protein-related weak
similarity to Replication Protein A 70 kDa DNA-binding
subunit (RP-A) (RF-A) (Replication factor-A protein 1)
(Single-stranded DNA-binding protein) (DMRPA1)
(GI:2498844)(SP:Q24492) [Drosophila melanogaster]
Length = 474
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +3
Query: 81 WNTYYAGQTVNGRIEYVFDS--PKKVR 155
WN Y + V+G+I+Y F P+K R
Sbjct: 251 WNAYGDDEVVDGKIDYTFSDVHPRKTR 277
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,837,462
Number of Sequences: 28952
Number of extensions: 332711
Number of successful extensions: 841
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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