Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1652
         (709 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P58145 Cluster: Ribosomal operon-associated A protein; ...    33   5.2  

>UniRef50_P58145 Cluster: Ribosomal operon-associated A protein;
           n=1; Euglena longa|Rep: Ribosomal operon-associated A
           protein - Astasia longa (Euglenophycean alga)
          Length = 519

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 111 KEFFRIEYRQRNGEQKQNYLIKIFLHTYILDKTN*LKYFFYYSTFFFN 254
           K F ++ Y   N   K NY+ K +L+  +    N LKYF   + F FN
Sbjct: 167 KNFMKLYYFTINFNNKFNYMNKKWLYKNLTFNINFLKYFLKLNNFIFN 214


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,746,336
Number of Sequences: 1657284
Number of extensions: 9897643
Number of successful extensions: 21221
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 20610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21214
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)