Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1652
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   4.3  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   7.4  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   7.4  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 302 FFYNFRRVQIQNGYSRAPVSVRNKKNSATHEFGNVSHSILRFFSC 436
           FFY    +QI+        ++RN     T+ F NV+ S   F  C
Sbjct: 188 FFYTCL-IQIETQCEIVSDTLRNLDKIVTNGFRNVAESRKIFIEC 231


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +1

Query: 547 IRLHNNETPYRTP--DIAHVTRDHRTHHMRYTFANQR 651
           +R H+ E P+R P  D         T HMR T + +R
Sbjct: 41  VRTHSGEKPFRCPVCDRRFSQSSSVTTHMR-THSGER 76


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +1

Query: 547 IRLHNNETPYRTP--DIAHVTRDHRTHHMRYTFANQR 651
           +R H+ E P+R P  D         T HMR T + +R
Sbjct: 297 VRTHSGEKPFRCPVCDRRFSQSSSVTTHMR-THSGER 332


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,548
Number of Sequences: 336
Number of extensions: 2687
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)