Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1652
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer... 29 4.3
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ... 29 4.3
U28739-7|AAB93458.1| 681|Caenorhabditis elegans Cell division c... 28 7.5
U28739-6|AAM54206.1| 695|Caenorhabditis elegans Cell division c... 28 7.5
U28739-5|AAT68903.1| 707|Caenorhabditis elegans Cell division c... 28 7.5
U28739-4|AAM54205.1| 693|Caenorhabditis elegans Cell division c... 28 7.5
U28739-3|AAB93459.1| 1063|Caenorhabditis elegans Cell division c... 28 7.5
AY661747-1|AAT74546.1| 707|Caenorhabditis elegans CDC-14 phosph... 28 7.5
AY661746-1|AAT74545.1| 695|Caenorhabditis elegans CDC-14 phosph... 28 7.5
AY661745-1|AAT74544.1| 681|Caenorhabditis elegans CDC-14 phosph... 28 7.5
AY661744-1|AAT74543.1| 1063|Caenorhabditis elegans CDC-14 phosph... 28 7.5
AY661743-1|AAT74542.1| 693|Caenorhabditis elegans CDC-14 phosph... 28 7.5
AF024503-5|AAG24096.1| 330|Caenorhabditis elegans Serpentine re... 28 7.5
AF000363-1|AAB94407.1| 681|Caenorhabditis elegans protein phosp... 28 7.5
>Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical
protein F41E7.2 protein.
Length = 558
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 311 NFRRVQIQNGYSRAPVSVRNKKNSATHEFGN 403
NF + I+NGYSRA S ++ N+ T+ GN
Sbjct: 526 NFVPISIENGYSRA--SYQHSNNTKTYASGN 554
>Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical
protein F41E7.2 protein.
Length = 558
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 311 NFRRVQIQNGYSRAPVSVRNKKNSATHEFGN 403
NF + I+NGYSRA S ++ N+ T+ GN
Sbjct: 526 NFVPISIENGYSRA--SYQHSNNTKTYASGN 554
>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform b protein.
Length = 1051
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +3
Query: 549 PPTQQ*NSLPNP*HSSRYTRPQNTPHALHIRKSTLS**FDIFPSHVS--SAITGT 707
P Q S N H TRPQN PH L++ S D P++ S + GT
Sbjct: 967 PDDSQGASSINAMHLPMGTRPQNVPHTLNVNTDDWSQSSDFRPAYAKEPSPLQGT 1021
>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform a protein.
Length = 1222
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +3
Query: 549 PPTQQ*NSLPNP*HSSRYTRPQNTPHALHIRKSTLS**FDIFPSHVS--SAITGT 707
P Q S N H TRPQN PH L++ S D P++ S + GT
Sbjct: 1138 PDDSQGASSINAMHLPMGTRPQNVPHTLNVNTDDWSQSSDFRPAYAKEPSPLQGT 1192
>U28739-7|AAB93458.1| 681|Caenorhabditis elegans Cell division
cycle related protein14, isoform c protein.
Length = 681
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 317 RRVQIQNGYSRAPVSV 364
RRVQ+QNG S APV++
Sbjct: 401 RRVQVQNGRSTAPVTI 416
>U28739-6|AAM54206.1| 695|Caenorhabditis elegans Cell division
cycle related protein14, isoform d protein.
Length = 695
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 317 RRVQIQNGYSRAPVSV 364
RRVQ+QNG S APV++
Sbjct: 401 RRVQVQNGRSTAPVTI 416
>U28739-5|AAT68903.1| 707|Caenorhabditis elegans Cell division
cycle related protein14, isoform e protein.
Length = 707
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 317 RRVQIQNGYSRAPVSV 364
RRVQ+QNG S APV++
Sbjct: 401 RRVQVQNGRSTAPVTI 416
>U28739-4|AAM54205.1| 693|Caenorhabditis elegans Cell division
cycle related protein14, isoform a protein.
Length = 693
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 317 RRVQIQNGYSRAPVSV 364
RRVQ+QNG S APV++
Sbjct: 401 RRVQVQNGRSTAPVTI 416
>U28739-3|AAB93459.1| 1063|Caenorhabditis elegans Cell division
cycle related protein14, isoform b protein.
Length = 1063
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 317 RRVQIQNGYSRAPVSV 364
RRVQ+QNG S APV++
Sbjct: 401 RRVQVQNGRSTAPVTI 416
>AY661747-1|AAT74546.1| 707|Caenorhabditis elegans CDC-14
phosphatase isoform E protein.
Length = 707
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 317 RRVQIQNGYSRAPVSV 364
RRVQ+QNG S APV++
Sbjct: 401 RRVQVQNGRSTAPVTI 416
>AY661746-1|AAT74545.1| 695|Caenorhabditis elegans CDC-14
phosphatase isoform D protein.
Length = 695
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 317 RRVQIQNGYSRAPVSV 364
RRVQ+QNG S APV++
Sbjct: 401 RRVQVQNGRSTAPVTI 416
>AY661745-1|AAT74544.1| 681|Caenorhabditis elegans CDC-14
phosphatase isoform C protein.
Length = 681
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 317 RRVQIQNGYSRAPVSV 364
RRVQ+QNG S APV++
Sbjct: 401 RRVQVQNGRSTAPVTI 416
>AY661744-1|AAT74543.1| 1063|Caenorhabditis elegans CDC-14
phosphatase isoform B protein.
Length = 1063
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 317 RRVQIQNGYSRAPVSV 364
RRVQ+QNG S APV++
Sbjct: 401 RRVQVQNGRSTAPVTI 416
>AY661743-1|AAT74542.1| 693|Caenorhabditis elegans CDC-14
phosphatase isoform A protein.
Length = 693
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 317 RRVQIQNGYSRAPVSV 364
RRVQ+QNG S APV++
Sbjct: 401 RRVQVQNGRSTAPVTI 416
>AF024503-5|AAG24096.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein246 protein.
Length = 330
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -2
Query: 198 ICMYVKIF*LNSFVFVPRSFA--GILFERIP 112
IC++V F + F+F+P A ++FER+P
Sbjct: 139 ICLFVPTFLMIPFIFLPEQEAARALVFERLP 169
>AF000363-1|AAB94407.1| 681|Caenorhabditis elegans protein
phosphatase CDC14 protein.
Length = 681
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 317 RRVQIQNGYSRAPVSV 364
RRVQ+QNG S APV++
Sbjct: 401 RRVQVQNGRSTAPVTI 416
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,305,785
Number of Sequences: 27780
Number of extensions: 240328
Number of successful extensions: 538
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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