Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1651
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    29   0.53 
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ...    27   3.8  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    27   3.8  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   8.7  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    25   8.7  

>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 216 GLRETNVVRDRREESEKPRPFKIAHTRTFGKPPWFDAVQREYWACRERVG 365
           G+   N+  +R EE+  P PF  +   T     W D    EYW    R+G
Sbjct: 581 GIPVVNLAFERNEENPTPMPFLGSCEDTVS---WIDTFGSEYWENAARLG 627


>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 1   GYSKYDMHELGVNRFLGLHNNKRFLRDRVKEVPG 102
           G    + +E G N+ LG+HN  R L D   +  G
Sbjct: 196 GQKVQNAYEDGKNQLLGIHNEARRLADAKNQAEG 229


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 524 SHSRNPSLVLHSSVNDTPDGNVHVVGTEILQEFHHLATL 408
           S S+NP  +L +  N   DG ++V   +I+   +HL T+
Sbjct: 616 SSSKNPMNLLFTLHNSITDGKLNVHCNDIIPGRYHLKTI 654


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 351  RERVGLSDYSSFTKIDIQSQGREVVELLQYLCSNDVDV 464
            R +VG+S  ++F  ++  S G  +   + Y+ +ND++V
Sbjct: 986  RLQVGISSQATFQSLEAGSPGAIMALTMIYMKTNDLEV 1023


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 538 PSQAAVILVTPRSFCIPV*MILPTGTSTSLEQ 443
           P++    L+  RSF IP    +PT T+T+ E+
Sbjct: 620 PAKERQHLLAERSFSIPPVADVPTSTTTAFEE 651


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,279
Number of Sequences: 5004
Number of extensions: 52562
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)