Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1651
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0291 - 22837412-22838128 30 2.2
11_04_0327 + 16420327-16420473,16420618-16420663,16421561-164217... 28 6.9
04_03_0677 - 18600568-18600609,18601241-18601307,18601511-186015... 28 6.9
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246... 28 6.9
10_01_0114 + 1423051-1424319 28 9.1
08_01_0338 + 3000897-3002447 28 9.1
06_03_0539 + 21919115-21919313,21919474-21919582,21920595-219208... 28 9.1
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405... 28 9.1
03_05_1005 + 29626662-29627354,29628478-29628551,29628821-296289... 28 9.1
>03_05_0291 - 22837412-22838128
Length = 238
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 483 E*YSRRERPRRWNRDTAGVPPPRDLE 406
E +S+R+R RR +RD A PPP E
Sbjct: 38 EGWSKRKRSRRRHRDRAAAPPPHGSE 63
>11_04_0327 +
16420327-16420473,16420618-16420663,16421561-16421702,
16423700-16423779,16424487-16424677
Length = 201
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +3
Query: 306 KPPWFDAVQREYWACRERVGLSDYSSFTKIDIQSQGREVVELLQYLCSNDVDVPVGSIIH 485
K W + E A + GL +F+ I S + L Y+C +D D P G +I
Sbjct: 15 KASWL-GMSSEGGAAKFLSGLPSRGNFSSISASST---LGRLRVYVCEHDTDPPEGQVIE 70
Query: 486 TGMQN 500
T N
Sbjct: 71 TDTTN 75
>04_03_0677 -
18600568-18600609,18601241-18601307,18601511-18601596,
18602411-18602471,18602472-18602573,18602646-18602750,
18604031-18604109,18604804-18604963
Length = 233
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 342 WACRERVGLSDYSS-FTKIDIQSQG-REVVELL 434
WACR +G+ +SS F + D QG REV+ +L
Sbjct: 146 WACRSEIGVGLFSSDFDESDDPGQGFREVIIVL 178
>01_05_0788 +
25223373-25223405,25224285-25224373,25224496-25224624,
25224710-25224766,25224844-25224916,25225509-25225667,
25226755-25226904,25227013-25227268,25227358-25227479,
25227531-25227599,25227653-25227739,25227842-25227930,
25228168-25228224,25229162-25229258,25229348-25229506
Length = 541
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -3
Query: 693 LVNGPMTQMAVYIDVTSERVTEPLLGRCRFSHTLQRVCWIVGAI 562
L+ P T + Y D + PLL F L R WI+G I
Sbjct: 306 LLWSPFTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMI 349
>10_01_0114 + 1423051-1424319
Length = 422
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 318 FDAVQREYWACRERVGLSDYSSFTKIDIQSQGREVV 425
F+AV W CR RV +SD + T + I R+ V
Sbjct: 248 FEAVAAVMWRCRTRVVMSDPDAPTVLAITVNSRKYV 283
>08_01_0338 + 3000897-3002447
Length = 516
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Frame = +2
Query: 407 SRSRGGGTPAVSLFQRRGR--SRREYHSHWNAER---ARGYENDCSLARISENHYMMIAP 571
SR RGGG PA +L GR S Y W A R + G N L S+ ++
Sbjct: 111 SRPRGGGGPASALLSSGGRNVSSAPYGPTWRALRRCISSGVLNPARLRAFSDARRWVLDV 170
Query: 572 TIQQTR 589
I R
Sbjct: 171 LISHVR 176
>06_03_0539 +
21919115-21919313,21919474-21919582,21920595-21920819,
21921140-21921239,21921782-21921865,21922000-21922058,
21922578-21922770
Length = 322
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 106 HYGLPYPFYEFETGRNLRLSPIY 174
HY LP F++ GRNL+ S Y
Sbjct: 84 HYELPTTFFKLVLGRNLKYSSCY 106
>05_07_0260 -
28739035-28739085,28739316-28739596,28740545-28740572,
28740653-28740749,28741216-28741272,28741353-28741415,
28741533-28741621,28741779-28741865,28742041-28742162,
28742245-28742500,28742595-28742744,28743120-28743278,
28743820-28743892,28743968-28744024,28744115-28744243,
28744469-28744560,28745220-28745252
Length = 607
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -3
Query: 681 PMTQMAVYIDVTSERVTEPLLGRCRFSHTLQRVCWIVGAI 562
P T + Y D + PLL F L R WI+G I
Sbjct: 311 PFTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMI 350
>03_05_1005 +
29626662-29627354,29628478-29628551,29628821-29628963,
29629051-29629097,29629176-29629284,29629364-29629425,
29629791-29629905,29630375-29630535
Length = 467
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -3
Query: 210 LTEDCSVVSQCRVDGRQAQVTTSLEFVERIRKAVMN----AWNLLNAVSKESLVVVQSKE 43
LTE C +++ RVD Q V +++ +RI ++N +L VS+ L V S E
Sbjct: 330 LTERCHTIAENRVDRLQRLVLAAVKQCQRIHGMLLNPPIQIADLQPVVSQSKLAFVASAE 389
Query: 42 T 40
+
Sbjct: 390 S 390
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,353,764
Number of Sequences: 37544
Number of extensions: 390624
Number of successful extensions: 1233
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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