Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1651
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical ...    92   3e-19
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr...    28   6.1  

>AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical
           protein Y106G6H.5 protein.
          Length = 855

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 45/84 (53%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
 Frame = +3

Query: 303 GKPPWFDAVQREYWACRERVGLSDYSSFTKIDIQSQGREVVELLQYLCSNDVDVPVGSII 482
           GKP WF+ V  EY ACRERVGL D SSF+K DI   G + VE LQ+LCS +VD P+G+ +
Sbjct: 491 GKPEWFERVASEYEACRERVGLMDMSSFSKYDI--TGEDAVEYLQFLCSANVDEPIGTTV 548

Query: 483 HTGMQNERG--VTRMTAAWLGYRR 548
           +TGMQ+++G  VT  T + LG ++
Sbjct: 549 YTGMQHQKGGYVTDCTLSRLGEKK 572



 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 40/83 (48%), Positives = 52/83 (62%)
 Frame = +1

Query: 7   SKYDMHELGVNRFLGLHNNKRFLRDRVKEVPGVHYGLPYPFYEFETGRNLRLSPIYPTLR 186
           S  D+  + V RF+ LH N ++L  R  EV  + Y   Y  ++  T RNLR++PIY  LR
Sbjct: 394 STADVARVDVGRFIDLHANNQYLIGRTPEVAALTYSNLYHSHQCHTARNLRMAPIYHQLR 453

Query: 187 DNGAVFGQVMGYERPTWFETVEK 255
           D GAVFG++MGYERP WFE   K
Sbjct: 454 DAGAVFGEIMGYERPLWFEKTPK 476



 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
 Frame = +2

Query: 509 GYENDCSLARISENHYMMIAPTIQQTRCKVWLKR-HLPSNGSVTLSDVTSMYTAICVMGP 685
           GY  DC+L+R+ E  + M+APTIQQ R  VW+K+        V + DVT  YTA+ ++GP
Sbjct: 558 GYVTDCTLSRLGEKKFFMVAPTIQQERVLVWMKKWQAILKARVHVQDVTGAYTALDLIGP 617

Query: 686 FTR 694
            +R
Sbjct: 618 SSR 620


>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
            protein.
          Length = 1613

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 443  LFQRRGRSRREYHSHW--NAERARGYENDCSLARISENHYMM 562
            L Q    SRREY + W  N ++ +GY++  SL   +   Y M
Sbjct: 1051 LEQENTESRREYSTRWSTNIQKEQGYKSVISLKLEAPRDYTM 1092


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,844,400
Number of Sequences: 27780
Number of extensions: 314916
Number of successful extensions: 1004
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)