Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1651
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   1.00 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   7.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   7.0  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.3  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
 Frame = +1

Query: 94  VPGVHYG-------LPYPFYEFETGRNLRLSPIYPTLRDNGAVFGQVMGY 222
           VPG HYG       +PYP +      ++R +  Y   +D+G+    + GY
Sbjct: 61  VPGHHYGAAGSQQDMPYPRFPPYNRMDMRNATYYQHQQDHGSGMDGMGGY 110


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = +2

Query: 194 EQSSVRLWATRDQRGSRP*RRERETASVQDSAHENFRE 307
           E++S + ++   +R  +  + ERE    ++++ E FR+
Sbjct: 265 ERTSHKRYSRSREREQKSYKNEREYRKYRETSKERFRD 302


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 174 PDTERQRSSLRSGYGLRETNVVRDRREESEKPRPFKIAHTR 296
           PD E++     +G  LRE     DRR     P  F   H+R
Sbjct: 94  PDEEKRYQEHPNGKILRELQTDYDRRLHDNSP-SFLSDHSR 133


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 538 DIGEPLHDDSSDD 576
           DIG PLH D +++
Sbjct: 246 DIGPPLHADQAEE 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,188
Number of Sequences: 438
Number of extensions: 4743
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)