Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1651
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63500.1 68414.m07180 protein kinase-related low similarity t...    29   2.5  
At4g33110.1 68417.m04717 coclaurine N-methyltransferase, putativ...    29   4.3  
At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase fa...    28   5.7  
At4g33120.1 68417.m04718 coclaurine N-methyltransferase, putativ...    28   7.6  
At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finger) fa...    28   7.6  
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes...    28   7.6  
At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp...    27   10.0 
At3g14170.1 68416.m01791 expressed protein                             27   10.0 
At2g28320.1 68415.m03442 pleckstrin homology (PH) domain-contain...    27   10.0 

>At1g63500.1 68414.m07180 protein kinase-related low similarity to
           protein kinase [Arabidopsis thaliana]; contains Pfam
           profile: PF00069 Eukaryotic protein kinase domain
          Length = 422

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -3

Query: 507 LARSAFQCE*YSRRERPRRWNRDTAGVPPPRDLET 403
           L R A +C  Y  RERP   +  TA +P  +DLET
Sbjct: 220 LIRLASRCLQYEPRERPNPKSLVTAMIPLQKDLET 254


>At4g33110.1 68417.m04717 coclaurine N-methyltransferase, putative
           similar to coclaurine N-methyltransferase [Coptis
           japonica] GI:16754879; contains Pfam profile PF02353:
           Cyclopropane-fatty-acyl-phospholipid synthase
          Length = 355

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 106 HYGLPYPFYEFETGRNLRLSPIY 174
           HY LP  F+E   GRN++ S  Y
Sbjct: 80  HYELPTAFFELVLGRNMKYSSCY 102


>At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Mus
           musculus [SP|P70704], {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1213

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 261 RSLLYGLEPRWSLVAHNLTEDCSVVSQCRVDGRQAQVTTSL 139
           + L+Y L+P   ++  +L+ +C+ V  CRV   Q    TSL
Sbjct: 791 KCLMYALDPSLRVMLLSLSLNCTSVVCCRVSPLQKAQVTSL 831


>At4g33120.1 68417.m04718 coclaurine N-methyltransferase, putative
           similar to coclaurine N-methyltransferase [Coptis
           japonica] GI:16754879
          Length = 355

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 106 HYGLPYPFYEFETGRNLRLSPIY 174
           HY LP  F+E   GRN++ S  Y
Sbjct: 80  HYELPTAFFEHALGRNIKYSCCY 102


>At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type(RING finger)
          Length = 358

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 410 RSRGGGTPAVSLFQRRGRSRREYHSHWNAERARGYENDCSLA 535
           RS    +PA++ +Q      RE H  +N +R + + N  +LA
Sbjct: 247 RSNQRSSPAINSYQGSSTQMREQHHAYNHQRQQHHANGPTLA 288


>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
           from this gene
          Length = 1035

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 348 CRERVGLSDYSSFTKIDIQSQGREVVELLQY 440
           CRER   S Y  FT+  I+S  + V E+  Y
Sbjct: 810 CRERTKSSSYFEFTQAGIESACQHVSEVAAY 840


>At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 930

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 176 RH*ETTEQSSVRLWATRDQRGSRP*RRERETASVQDSAHE 295
           RH   +E  S   + +RD++GSR   + RE++  + S+H+
Sbjct: 857 RHRNDSESDSSSDYHSRDKQGSRSRSKRRESSREKRSSHK 896


>At3g14170.1 68416.m01791 expressed protein 
          Length = 484

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 365 ADPLPARPVLTLHRVEPGRLPESSRVRYLER 273
           A PL  RP     + EP +L  SS V Y+ R
Sbjct: 222 AGPLQCRPATAPTKAEPKKLSLSSTVNYINR 252


>At2g28320.1 68415.m03442 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           contains Pfam profiles PF01852: START domain, PF00169:
           PH domain
          Length = 737

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 690 VNGPMTQMAVYIDV-TSERVTEPLLGRCRFSH 598
           +N  + +MA  I   T E + E LLG CRF+H
Sbjct: 695 LNKLVIEMAFLIQANTEEELPEYLLGTCRFNH 726


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,013,533
Number of Sequences: 28952
Number of extensions: 293894
Number of successful extensions: 884
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)