Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1650
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    27   2.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.6  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    26   4.5  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    26   5.9  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   5.9  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   7.8  

>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 193 ERSRTNEQKLVDKTTNIQNYTHIVNETSFDYE 98
           ++ + N  KL  +  ++ N + I+NE  FDY+
Sbjct: 694 KKKKKNSGKLTIEAEHVSNDSPIINEAPFDYK 725


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 469  NSTNLLIKFKFHKVSRAIN 413
            N+TNLL K   HK+SR +N
Sbjct: 1727 NATNLLQKAALHKISRFVN 1745


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 306 RHPKAYILVTENRDKLVNFDTNPVYY*KTK 217
           ++P AYIL  +   +L NFDT   Y  + K
Sbjct: 675 KNPSAYILAAQLYTRLKNFDTASKYLEQAK 704


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 199 SCERSRTNEQKLVDKTTNIQNYTHIVNETSFD 104
           S +  R +EQK   K + I++ T+I+ E+S+D
Sbjct: 400 SIKDGRFHEQKARLKKSGIRSVTYILEESSYD 431


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 226 KDKTSFETHSCERSRTNEQKLVDKTTNIQNYTHI 125
           KD+T+F  H+ +RS+T+ +   +K   I +   I
Sbjct: 750 KDETNFRKHNAKRSKTDIRSWFEKKQPIDSDVEI 783


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 6/16 (37%), Positives = 15/16 (93%)
 Frame = -1

Query: 145 IQNYTHIVNETSFDYE 98
           ++N+ H++++T+FD+E
Sbjct: 719 VKNFVHLLDDTNFDFE 734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,460
Number of Sequences: 5004
Number of extensions: 44111
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)