Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1650
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938...    29   4.7  
07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794...    28   6.2  

>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
            9387180-9387325,9387416-9387572,9387720-9387778,
            9388204-9388360,9389001-9389150,9389280-9389416,
            9390071-9390217,9390292-9390393,9390742-9390799,
            9391997-9392034,9392124-9392250,9392320-9392493,
            9393125-9393256,9393940-9394049,9394752-9394812,
            9395036-9395213,9395326-9395531,9395796-9395915,
            9396496-9396594,9396983-9397204,9397482-9397621,
            9397741-9397852,9398021-9398071,9398151-9398240,
            9398397-9398567,9398663-9398815,9399774-9399950,
            9400045-9400182,9400295-9400365,9400739-9400838,
            9401324-9401380,9401469-9401525,9401619-9401699,
            9401782-9401864,9401975-9402110
          Length = 1632

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 196  CERSRTNEQKLVDKTTNIQNYTHIVNETSFDYEI*TNQP 80
            C   + N  KL +K TN++N  H++ + + +     N P
Sbjct: 1132 CNHLQQNLDKLQEKLTNMENENHVLRQKALNMSPLNNMP 1170


>07_03_1384 +
           26177053-26177227,26178754-26178823,26179427-26179469,
           26179888-26179965,26180010-26180027,26180103-26180187,
           26180273-26180355,26180489-26180546,26181258-26181368,
           26181769-26181826,26182005-26182101,26182585-26182620,
           26183107-26183137,26183993-26184046,26184159-26184301,
           26184411-26184560,26185084-26185317,26185450-26185509,
           26185974-26186204,26186829-26186981
          Length = 655

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 505 SYS*VIPPVFKEQFNIFGFCLTIKKKFWFENGLTDSKKQQHDKYHYL 645
           +Y  +  P+ K  +++FG  L   K + F   + +  K+Q+ K H+L
Sbjct: 100 AYELLTNPILKRDYDLFG--LDHHKVYVFAQDVLEKVKEQYQKEHFL 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,610,459
Number of Sequences: 37544
Number of extensions: 199551
Number of successful extensions: 309
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)