Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1650
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD...    29   2.9  
At2g44890.1 68415.m05588 cytochrome P450 family protein contains...    27   9.0  

>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
           CDP-related similar to CCAAT displacement protein (CDP)
           (Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
           contains Pfam:PF00904 Involucrin repeat
          Length = 689

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 229 LKDKTSFETHSCERSRTNEQKLVDKTTNIQNYTH 128
           LK+K  F T   E+++ +  KL  K   +Q+Y H
Sbjct: 535 LKEKIGFLTDELEKTKADNVKLYGKIRYVQDYNH 568


>At2g44890.1 68415.m05588 cytochrome P450 family protein contains
           Pfam PF00067: Cytochrome P450; similar to  Cytochrome
           P450 86A2 (SP:O23066) [Arabidopsis thaliana]
          Length = 505

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -2

Query: 150 LIFKIIRTL-STKRASITRFKPISLRSIIQSKFLLQLSEGILNEHSRY 10
           +I K + +L +TKR  +++ +  S+R  I SKFLL+  +   N + +Y
Sbjct: 241 IIDKFVYSLITTKRKELSKEQNTSVREDILSKFLLESEKDPENMNDKY 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,383,966
Number of Sequences: 28952
Number of extensions: 195364
Number of successful extensions: 336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)