Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1649
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   1.2  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    27   3.5  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   8.2  

>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 303 VNCSNMEQKFPSPLFVFGEKVRTRAI 380
           +  S ME KFP P F+ G K + RAI
Sbjct: 647 LGASEMEFKFPEPGFLEGVKTKQRAI 672


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/48 (20%), Positives = 26/48 (54%)
 Frame = -1

Query: 684 RWHVDVSFYVVVTGVRHTNSRRHSTTFRSAGENCSAASGWAAARSTIL 541
           +W  +++   + TG+R +++  H    R AG + +  + +A  + T++
Sbjct: 128 QWASNLNLLGIPTGLRDSDATTHFVMNRQAGSSITVGTMYAFLKKTVI 175


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 112 IRTTVGFNEECCVPQRWMPNGPDPTLDLVIALMCMGLYPNVCLHI 246
           +RT +    +  V  R   + P P +D V   +C+ L  NV  H+
Sbjct: 418 LRTYMNILSDINVKIRSPTSTPTPLIDAVKQYICLALAKNVVSHV 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,873
Number of Sequences: 5004
Number of extensions: 52898
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)