Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1649
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389... 42 5e-04
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616... 39 0.003
10_02_0180 + 6292190-6292654,6293923-6294915 33 0.17
02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227 31 0.69
06_01_0326 + 2372176-2373057,2373146-2373610 31 0.91
11_06_0277 + 21843658-21845220,21846533-21846718,21847037-218471... 30 1.6
06_01_0327 + 2377121-2377812,2377911-2378265 30 1.6
06_01_0322 - 2335577-2335931,2336030-2336991 30 1.6
01_01_1126 + 8925685-8925745,8926178-8926343,8927135-8927585,892... 29 3.7
01_05_0620 + 23742950-23743794,23745705-23746508,23746593-23747793 29 4.9
11_01_0763 + 6402901-6403971,6404581-6404826 28 6.4
08_02_0052 + 11699468-11699700,11699799-11699916,11699991-117006... 28 6.4
05_07_0066 + 27453611-27453627,27454729-27454872,27455998-274566... 28 6.4
04_04_0564 - 26261199-26261508,26261605-26261697,26262150-262622... 28 6.4
02_04_0133 + 20101553-20103070 28 6.4
02_03_0151 - 15759254-15760459 28 6.4
11_04_0203 - 14828009-14828110,14828171-14828269,14828375-148284... 28 8.5
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 28 8.5
07_01_0457 - 3468419-3468585,3469674-3469842,3470339-3470384,347... 28 8.5
06_03_1409 - 29966787-29966990,29967150-29967413,29968098-299682... 28 8.5
>04_03_0985 - 21438036-21438116,21438373-21438495,21438903-21438995,
21439176-21439388,21439589-21439687,21440248-21440317,
21442549-21442619,21442817-21442954,21443034-21443132,
21444061-21444144,21444268-21444324,21444594-21444683,
21444886-21445026,21445778-21445882,21445962-21446114,
21446215-21446316,21446404-21446562,21447039-21447222,
21447336-21447418,21447523-21447588,21447736-21447793,
21447903-21448003,21448269-21448355,21449063-21449185,
21449285-21449364,21449857-21450066,21450159-21450270,
21450709-21450927,21451356-21451726,21451866-21451965,
21452544-21452752,21453232-21453337,21453435-21453767
Length = 1439
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 288 IHKTSVNCSNMEQKFPSPLFVFGEKVRTRAISCKQTTMVAPIHLLLFGCNKV-EWVDNVV 464
IH +S+N S ++P VF EKV T + + T++++P LLLFG V + VV
Sbjct: 1319 IHPSSMNHSLKAGQYP--FLVFLEKVETSKVFLRDTSVISPYSLLLFGGTMVIQHQTGVV 1376
Query: 465 RLDNWL 482
+D WL
Sbjct: 1377 IIDGWL 1382
>10_08_0343 - 16960764-16960895,16961166-16961171,16961272-16961640,
16962118-16962304,16962567-16962759,16962864-16963137,
16963215-16963374,16963985-16964199,16964784-16964876,
16965192-16965260,16965293-16965445,16965534-16965737,
16966416-16966691,16967336-16967431,16967585-16967788,
16967877-16968069,16968229-16968374,16968771-16969425,
16971462-16971774,16971989-16972139,16972602-16973815,
16973933-16974182,16974784-16975035
Length = 1934
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +3
Query: 288 IHKTSVNCSNMEQKFPSPLFVFGEKVRTRAISCKQTTMVAPIHLLLFG 431
IH +SVN +FP P V+ EKV+T +I + +T ++ LLLFG
Sbjct: 1812 IHPSSVNAGI--HQFPLPYLVYSEKVKTASIYVRDSTNISDYALLLFG 1857
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 187 LDLVIALMCMGLYPNV 234
L++V A++C GLYPNV
Sbjct: 1775 LEMVCAVLCAGLYPNV 1790
>10_02_0180 + 6292190-6292654,6293923-6294915
Length = 485
Score = 33.5 bits (73), Expect = 0.17
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = +2
Query: 458 RGAAGQLAELPDVAAIGALIIALRPAIERIVERAAAQPDAALQFSPAERKVVE 616
R +G +A P +A A A PA++ RAAA DA L +P +R VVE
Sbjct: 212 RLGSGAVARTPFASAAAASASASSPALQNGARRAAAAADAMLS-TPPDRMVVE 263
>02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227
Length = 1000
Score = 31.5 bits (68), Expect = 0.69
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 279 PALIHKTSVNCSNMEQKFPSPLFVFGEKVRTRAISCKQTTMVAPIHLLLFGCNKVEWVDN 458
PAL+ +C+N+E F G R + SC TT + I L + GC K+ +D+
Sbjct: 800 PALLRLKIYSCANLE--FIGESVFTGN--RPQRDSCSTTTFASLISLEICGCEKLTSIDD 855
Query: 459 VV 464
+V
Sbjct: 856 LV 857
>06_01_0326 + 2372176-2373057,2373146-2373610
Length = 448
Score = 31.1 bits (67), Expect = 0.91
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 225 VQAHAHEGYDQVQSWVRSVRHPTLWNTAFFVEAYGGANGRAYSR 94
V + YD+ + WV + N AFF E+ GG N R Y+R
Sbjct: 376 VTKREYTSYDEYKEWVWKSQDDLFLNGAFFNES-GGRNERRYNR 418
>11_06_0277 +
21843658-21845220,21846533-21846718,21847037-21847165,
21847256-21847415,21847846-21847955,21848038-21848247,
21848473-21848730,21848810-21848885,21849217-21849350,
21849928-21850007,21850265-21850316
Length = 985
Score = 30.3 bits (65), Expect = 1.6
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Frame = +2
Query: 278 TGIDTQDLSELQQHGAEVPLASVRFRREGAHPGHQLQADHHGR-------SHTSAALRL* 436
T D +D + + AE L S+ + +L A H G H AAL
Sbjct: 25 TNADWEDATAAFREEAEAALRSLSIGEDDGAAAERLAARHGGSPLAHHVVGHARAALARA 84
Query: 437 QSGMGGQRGAAGQLAELPDVAA--IGALIIALRPAIERIVERAAA 565
+ R AAG P++AA AL+ A RP E + E A A
Sbjct: 85 GDAVAPLRRAAGLAPGCPEIAAALAAALLYARRPG-EALAECARA 128
>06_01_0327 + 2377121-2377812,2377911-2378265
Length = 348
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 201 YDQVQSWVRSVRHPTLWNTAFFVEAYGGANGRAYSR 94
YD+ + WV + + N AFF E+ GG N R+Y +
Sbjct: 284 YDEYKEWVWKSQGDVMMNGAFFNES-GGQNERSYDQ 318
>06_01_0322 - 2335577-2335931,2336030-2336991
Length = 438
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 201 YDQVQSWVRSVRHPTLWNTAFFVEAYGGANGRAYSR 94
YD+ + WV + + N AFF E+ GG N R+Y +
Sbjct: 374 YDEYKEWVWKSQGDVMMNGAFFNES-GGQNERSYDQ 408
>01_01_1126 +
8925685-8925745,8926178-8926343,8927135-8927585,
8927832-8927900,8928067-8928110,8928211-8928355
Length = 311
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 458 RGAAGQLAELPDVAAIGALIIALRPAIERIVERAAAQPDAALQFSPAERKVVECLREFV 634
+ +G + VA I L ++ AI + + PDA FSP E + L+ FV
Sbjct: 179 KSGSGDTTPIDQVAIIELLAPSIFRAIVSLHPAGSTDPDAVAFFSPTEEHADKALQYFV 237
>01_05_0620 + 23742950-23743794,23745705-23746508,23746593-23747793
Length = 949
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 452 GQRGAAGQLAELPDVAAIGALIIALRPAIERIVERAAAQPDAA 580
G G G+L L + I RPA+ER RA A P AA
Sbjct: 784 GDIGVVGELPALQSLRLRATGRIDARPAVERFAVRAGAFPCAA 826
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 420 ADVWERPWWSACS*WPGCAPSRRKRTEARGTSAP 319
A W RPWW W RR+R EARG P
Sbjct: 106 AAAW-RPWWQRAERW------RRRRREARGRLRP 132
>08_02_0052 +
11699468-11699700,11699799-11699916,11699991-11700659,
11700741-11700842,11700921-11701181,11701838-11702009,
11702128-11702528,11703171-11703587
Length = 790
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +2
Query: 188 WTWS*PSCAWACTLTFVYTSGREGINDGRETGIDTQDLSELQQHGAEVPLASVRFRREGA 367
W P + T + ++G ++DG + Q +ELQ EVP+ V F R+
Sbjct: 343 WRELFPGIVASANTTKIISTGPSNLHDGLLQLKNLQMRAELQVMSPEVPVCDVTFLRQSV 402
Query: 368 HPGHQL 385
G L
Sbjct: 403 QFGSGL 408
>05_07_0066 +
27453611-27453627,27454729-27454872,27455998-27456690,
27457700-27458111,27458220-27458297,27458938-27458953,
27459038-27459192
Length = 504
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 347 RFRREGAHPGHQLQADHHGRSHTSAA 424
+++ H GH ADHHG S +S A
Sbjct: 347 KYQHHTGHGGHGQAADHHGPSSSSKA 372
>04_04_0564 -
26261199-26261508,26261605-26261697,26262150-26262295,
26262400-26262720,26263184-26263272,26263466-26263654,
26265546-26265804
Length = 468
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 385 ASRPPWSLPYICCSSAVTKWN 447
A+R S PY CS A++KWN
Sbjct: 322 ANRTGLSYPYSPCSEAISKWN 342
>02_04_0133 + 20101553-20103070
Length = 505
Score = 28.3 bits (60), Expect = 6.4
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 356 REGAHPG--HQLQADHHGRSHTSAALRL*QSGMGGQRGAAGQLAELPDVAAIGALI 517
R GA P L DHHG SH + ALR+ ++ +G G A + E+ + AAI A++
Sbjct: 364 RLGAVPAAVRVLATDHHGGSH-AQALRVLEAAVGCAEGRAA-VCEVAE-AAIPAVV 416
>02_03_0151 - 15759254-15760459
Length = 401
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 111 HSHHRRLQRRMLCSTTLDAERTGPNFGLGHSPHVHGP 221
H HRR +R + C L A G G+G S HV+ P
Sbjct: 47 HQRHRRRRRHLPC---LVAHVHGAAAGVGRSTHVYDP 80
>11_04_0203 -
14828009-14828110,14828171-14828269,14828375-14828461,
14828733-14829111,14829214-14829377,14829544-14829636,
14829843-14829989,14830065-14830166,14830392-14830490,
14830669-14830803,14830928-14831006,14831111-14831186,
14831281-14831370,14831723-14831798,14831880-14831914,
14832303-14832377,14832468-14832840
Length = 736
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 365 AHPGHQLQA---DHHGRSHTSAALRL*QSGMGGQRGAAGQ 475
AH G+QL A HH T+AA +G G AAGQ
Sbjct: 24 AHRGYQLSACPHHHHHHQMTAAAPDQRSAGAGAAAAAAGQ 63
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -2
Query: 167 GIQRCGTQHSSLKPTVVRMEGRTADHAACYLRG 69
G RCG +S P V R ADHAA RG
Sbjct: 143 GRGRCGGDANSSSPRVAGQASRFADHAASPGRG 175
>07_01_0457 -
3468419-3468585,3469674-3469842,3470339-3470384,
3470671-3470753,3471395-3471474,3472320-3472428,
3472667-3472735,3472874-3472924,3473059-3473184,
3473312-3473435,3473617-3473672,3473790-3473854,
3474438-3474513,3475050-3475108,3475275-3475365,
3475490-3475990
Length = 623
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = +1
Query: 97 AVRPSIRTTVGFNE------ECCVPQRWMPNGPDPTLDLVIALMCMGLYPNVCLHI 246
A PS+ T VGF+E E + P PD + +L G++P+ C+ +
Sbjct: 197 AALPSVSTAVGFDERMLLHSEIEIKPNPHPERPDRLRAIAASLAAAGIFPSKCVMV 252
>06_03_1409 -
29966787-29966990,29967150-29967413,29968098-29968241,
29969000-29969329
Length = 313
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 427 KSSRCMGATMVVCLQLMARVRTFSPKTNRGEG 332
+SSRC+GA+ CL A +P G G
Sbjct: 26 RSSRCVGASHARCLAADANAEAVAPSRRGGHG 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,582,768
Number of Sequences: 37544
Number of extensions: 445460
Number of successful extensions: 1571
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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