Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1649
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52045| Best HMM Match : DUF1605 (HMM E-Value=3.8e-14)              114   6e-26
SB_55323| Best HMM Match : DUF1605 (HMM E-Value=0.014)                 33   0.31 
SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_56799| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49)                   29   2.8  
SB_29630| Best HMM Match : Sigma54_activat (HMM E-Value=1)             29   2.8  
SB_14913| Best HMM Match : DUF720 (HMM E-Value=0.47)                   29   2.8  
SB_5214| Best HMM Match : SAP (HMM E-Value=0.8)                        29   2.8  
SB_3966| Best HMM Match : DUF720 (HMM E-Value=0.24)                    29   2.8  
SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_19755| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_13086| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_44278| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_36962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_529| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   5.0  
SB_47476| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_15594| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_35761| Best HMM Match : DUF720 (HMM E-Value=0.47)                   28   8.7  
SB_34445| Best HMM Match : DUF720 (HMM E-Value=0.47)                   28   8.7  
SB_29869| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_14691| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_52045| Best HMM Match : DUF1605 (HMM E-Value=3.8e-14)
          Length = 812

 Score =  114 bits (275), Expect = 6e-26
 Identities = 52/85 (61%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
 Frame = +3

Query: 243 HREE-KVLTTEGKPALIHKTSVNCSNMEQKFPSPLFVFGEKVRTRAISCKQTTMVAPIHL 419
           HRE+ KV+TTEGK AL+HK+SVNC+N E  FPSP FVFGEK+RTRA+SCKQ TMV P+ L
Sbjct: 511 HREKRKVITTEGKAALVHKSSVNCTNREYIFPSPFFVFGEKIRTRAVSCKQMTMVNPLQL 570

Query: 420 LLFGCNKVEWVDNVVRLDNWLNFQM 494
           LLF  ++V    +V+ +DNW+  +M
Sbjct: 571 LLFSSSRVLSSKDVICMDNWVQLRM 595



 Score = 37.1 bits (82), Expect = 0.014
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 166 PNGPDPTLDLVIALMCMGLYPNVCLH 243
           P+        V+AL+C+GLYPNVC+H
Sbjct: 486 PHNSSVLCQKVVALLCLGLYPNVCMH 511



 Score = 31.5 bits (68), Expect = 0.71
 Identities = 12/42 (28%), Positives = 28/42 (66%)
 Frame = +2

Query: 500 AIGALIIALRPAIERIVERAAAQPDAALQFSPAERKVVECLR 625
           A GA+++A+R AI+ ++ RAA+ P +  +  P + +++  ++
Sbjct: 598 AQGAMVVAMRQAIDMLLIRAASNPVSIAEPLPEDEQIINTVK 639



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -3

Query: 127 LRWCEWKGVQQTTLRVTYEAKHQLINILTTAIGFNEER 14
           +R+C+   +  +TLR+T EAK QL ++L  A G+ E R
Sbjct: 85  IRFCDSHQLNMSTLRMTSEAKLQLKDLLCNA-GYPEGR 121



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 169 NGPDPTLDLVIALMCMGLY 225
           +GPD  LDLV+AL+  GL+
Sbjct: 165 SGPDSNLDLVVALLSFGLF 183


>SB_55323| Best HMM Match : DUF1605 (HMM E-Value=0.014)
          Length = 125

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 288 IHKTSVNCSNMEQKFPSPLFVFGEKVRTRAISCKQTTMVAPIHLLLF 428
           IH  SVN       + SP  V+ EKV+T  +  + T+MV+   LLLF
Sbjct: 3   IHPKSVNFQ--VNFYESPYLVYHEKVKTSKVYIRDTSMVSVYALLLF 47


>SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 310 AATWSRSSPRLCSFSARRCAPGPSAASRPPWSLPYICCSSAVTKW 444
           A+ W RS P L +    RC    S   R PW + + CC ++ + W
Sbjct: 196 ASPW-RSLPELTNAGGARCRDS-SRPRRGPWLVCWTCCMTSSSFW 238


>SB_56799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 376 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 272
           A  R  S +T+  + N  S+ L   EV+C NAGFP
Sbjct: 185 ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 219


>SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 376 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 272
           A  R  S +T+  + N  S+ L   EV+C NAGFP
Sbjct: 258 ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 292


>SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49)
          Length = 1205

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 376  ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 272
            A  R  S +T+  + N  S+ L   EV+C NAGFP
Sbjct: 976  ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 1010


>SB_29630| Best HMM Match : Sigma54_activat (HMM E-Value=1)
          Length = 1118

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 649 HRRPSHKLPQTFYHLSLCRRELQRRVGLGRRA--LHDPLDGG 530
           H  P++K  +  Y+  + R  LQR V LGR A    DP  GG
Sbjct: 545 HTEPAYKTFRVVYNKRVRREHLQREVSLGRVAGPFTDPPFGG 586


>SB_14913| Best HMM Match : DUF720 (HMM E-Value=0.47)
          Length = 528

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 376 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 272
           A  R  S +T+  + N  S+ L   EV+C NAGFP
Sbjct: 299 ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 333


>SB_5214| Best HMM Match : SAP (HMM E-Value=0.8)
          Length = 660

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 376 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 272
           A  R  S +T+  + N  S+ L   EV+C NAGFP
Sbjct: 406 ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 440


>SB_3966| Best HMM Match : DUF720 (HMM E-Value=0.24)
          Length = 250

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 376 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 272
           A  R  S +T+  + N  S+ L   EV+C NAGFP
Sbjct: 21  ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 55


>SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 376 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 272
           A  R  S +T+  + N  S+ L   EV+C NAGFP
Sbjct: 263 ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 297


>SB_19755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 376 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 272
           A  R  S +T+  + N  S+ L   EV+C NAGFP
Sbjct: 392 ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 426


>SB_13086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 376 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 272
           A  R  S +T+  + N  S+ L   EV+C NAGFP
Sbjct: 21  ADTRNASDETSEEDENAVSITLAPDEVVCHNAGFP 55


>SB_44278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 145 CVPQRWMPNGPDPTLDLVIALMCMGLYPN 231
           C PQ W+ + P+   DL+ ++M + LY N
Sbjct: 212 CFPQPWVTSRPEAEGDLMKSIMALYLYRN 240


>SB_36962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 372 GCAPSRRKRTEARGTSAP 319
           GCAPSR+K  E+ G S+P
Sbjct: 2   GCAPSRQKEQESGGISSP 19


>SB_529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 372 GCAPSRRKRTEARGTSAP 319
           GCAPSR+K  E+ G S+P
Sbjct: 2   GCAPSRQKEQESGGISSP 19


>SB_47476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 376 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 272
           A  R  S +T+  + N  S+ L   +V+C NAGFP
Sbjct: 217 ADTRNASDETSEEDENAVSITLAPDKVVCHNAGFP 251


>SB_15594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 198 DQVQSWVRSVRHPTLWNTAFFVEAYGGANGRAYSR 94
           +Q ++  R+  H T WN AFF     G NG   +R
Sbjct: 359 EQGETSHRTADHITYWNKAFFSSTPIGVNGSGITR 393


>SB_35761| Best HMM Match : DUF720 (HMM E-Value=0.47)
          Length = 414

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 376 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 272
           A  R  S +T+  + N  S+ L   EV+C N GFP
Sbjct: 185 ADTRNASDETSEEDENAVSITLAPDEVVCHNTGFP 219


>SB_34445| Best HMM Match : DUF720 (HMM E-Value=0.47)
          Length = 371

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 376 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 272
           A  R  S +T+  + N  S+ L   +V+C NAGFP
Sbjct: 142 ADTRNASDETSEEDENAVSITLAPDKVVCHNAGFP 176


>SB_29869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 376 ARVRTFSPKTNRGEGNFCSMLLQFTEVLCINAGFP 272
           A  R  S +T+  + N  S+ L   +V+C NAGFP
Sbjct: 11  ADTRNASDETSEEDENAVSITLAPDKVVCHNAGFP 45


>SB_14691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 123 RRLQRRMLCSTTL---DAERTGPNFGLGHSPHVHGPV 224
           RR  RR  CS +L   DA     ++GLG+SP+ + P+
Sbjct: 216 RRKPRRPKCSHSLMFRDAPLYYHSYGLGYSPYAYAPL 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,830,884
Number of Sequences: 59808
Number of extensions: 490551
Number of successful extensions: 1374
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)