Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1649
         (717 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           25   2.3  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    25   3.1  
AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.       24   4.1  
AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.           23   7.2  
AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    23   9.5  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 13/64 (20%), Positives = 26/64 (40%)
 Frame = +2

Query: 227 LTFVYTSGREGINDGRETGIDTQDLSELQQHGAEVPLASVRFRREGAHPGHQLQADHHGR 406
           +  V T  R+    G +   +    SE ++    +     + ++   H  HQ Q  HH +
Sbjct: 603 MKLVITELRDDFPTGPDPNFNPNIFSEDEEDQQHLLQQQQQQQQHQHHQAHQHQGQHHAQ 662

Query: 407 SHTS 418
            H++
Sbjct: 663 HHSN 666


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 237 TNVRVQAHAHEGYDQVQSWVR 175
           T   V+A A E  DQVQ W++
Sbjct: 730 TTDEVRARAEEAVDQVQRWMQ 750


>AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.
          Length = 458

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 243 HREEKVLTTEGKPALIHK 296
           H   ++  TEGKPA+ H+
Sbjct: 261 HLHTEIFGTEGKPAIAHR 278


>AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.
          Length = 194

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 94  SAVRPSIRTTVGFNEEC 144
           S V+PS+ T  GF +EC
Sbjct: 124 SQVQPSVITATGFLKEC 140


>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 464 AAGQLA-ELPDVAAIGALIIALRPAIERIVERAAAQPDAALQFSPAERK 607
           AAG++  E+ +V   G  ++A +  +ER ++RA  +   A   S  ER+
Sbjct: 198 AAGRIVTEMAEVLITGIDMLAKKEDVERGLQRALERTAVAATTSLWERR 246


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 755,873
Number of Sequences: 2352
Number of extensions: 14321
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 72765525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)