Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1649
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical pr...    76   2e-14
U40413-2|AAK39174.1|  296|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical protein
            T07D4.3 protein.
          Length = 1301

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 44/86 (51%), Positives = 57/86 (66%), Gaps = 4/86 (4%)
 Frame = +3

Query: 249  EEKVLTTEGKPALIHKTS--VNCSN-MEQKFPSPLFVFGEKVRTRAISCKQTTMVAPIHL 419
            + KVLT E   ALI+K S  V  +N  E  FPSPL VF EKVRTR ISCKQ ++++ I L
Sbjct: 1023 KRKVLTIEQSSALINKYSMLVPMNNRQEMDFPSPLLVFTEKVRTRCISCKQMSVISAIQL 1082

Query: 420  LLFGCNKVEWV-DNVVRLDNWLNFQM 494
            L+FG  KVE V + +VR+D  +  +M
Sbjct: 1083 LVFGSRKVECVGEGLVRIDETITIRM 1108



 Score = 33.5 bits (73), Expect = 0.15
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 112  IRTTVGFNEECCVPQRWMPNGPDPTLDLVIALMCMGLYPNVCLHI 246
            +R    F E+         NGPD  L+L+ +L+ M LYPNV  ++
Sbjct: 977  LRNQCSFPEDILFDISVNVNGPDRELNLMRSLLVMALYPNVAYYV 1021


>U40413-2|AAK39174.1|  296|Caenorhabditis elegans Hypothetical
           protein C18B2.4 protein.
          Length = 296

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +2

Query: 332 PLASVRFRREGAHPGHQLQADHHGRSHTSAALRL*QSGMGGQRGAAGQLAELPDVAAIGA 511
           P+ +V+++  GA+PG   Q    G+ H     +  Q G    +GAA   + LPD   I  
Sbjct: 215 PVGTVQYQNVGAYPG---QPQQPGQYHPYPTNQPPQGGFNVGQGAAPHPSTLPDYNNIQQ 271

Query: 512 LIIALRPA 535
              A  PA
Sbjct: 272 QSSAQPPA 279


>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical protein
            C08B11.3 protein.
          Length = 1244

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 138  RMLCSTTLDAER-TGPNFGLGHSPHVHGPVP*RLSTHREEKVLTT 269
            RML  ++L+ +  T P F  G SPH H P+   + +     V TT
Sbjct: 1192 RMLNFSSLNEKTPTSPQFTAGSSPHRHQPIQQHIPSQPSPLVQTT 1236


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -3

Query: 346 NRGEGNFCSMLL---QFTEVLCINAGFP 272
           N+G+  FCS L    Q  +V C+NAGFP
Sbjct: 321 NQGQTCFCSELFNGKQCEKVNCMNAGFP 348


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -3

Query: 346 NRGEGNFCSMLL---QFTEVLCINAGFP 272
           N+G+  FCS L    Q  +V C+NAGFP
Sbjct: 321 NQGQTCFCSELFNGKQCEKVNCMNAGFP 348


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -3

Query: 346 NRGEGNFCSMLL---QFTEVLCINAGFP 272
           N+G+  FCS L    Q  +V C+NAGFP
Sbjct: 321 NQGQTCFCSELFNGKQCEKVNCMNAGFP 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,273,078
Number of Sequences: 27780
Number of extensions: 331074
Number of successful extensions: 986
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)